Variant report

Variant	rs55874944
Chromosome Location	chr5:118255589-118255590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12109252	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17381247	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17440213	0.87[ASN][1000 genomes]
rs2029036	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2377127	0.96[EUR][1000 genomes]
rs56078901	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57186800	0.81[AMR][1000 genomes]
rs6863846	0.82[AFR][1000 genomes]
rs73239065	1.00[ASN][1000 genomes]
rs73790355	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73790360	0.82[AFR][1000 genomes]
rs7722850	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:118227400-118270600	Weak transcription	Ovary	ovary
3	chr5:118233400-118259000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:118233800-118289200	Weak transcription	Psoas Muscle	Psoas
5	chr5:118239400-118257000	Weak transcription	Fetal Lung	lung
6	chr5:118243600-118265000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:118244000-118279600	Weak transcription	Liver	Liver
8	chr5:118244000-118287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:118245000-118260400	Weak transcription	Brain Anterior Caudate	brain
10	chr5:118245000-118272200	Weak transcription	Aorta	Aorta
11	chr5:118245600-118262200	Weak transcription	Primary T cells from cord blood	blood
12	chr5:118246600-118266800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:118250000-118261600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:118250400-118257600	Weak transcription	Fetal Kidney	kidney
15	chr5:118250400-118289400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:118252000-118279000	Weak transcription	Left Ventricle	heart
17	chr5:118253200-118280200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:118253400-118279200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:118253800-118258400	Weak transcription	K562	blood
20	chr5:118254000-118279800	Weak transcription	Pancreas	Pancrea
21	chr5:118254400-118255600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:118254600-118255600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr5:118255000-118257200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr5:118255000-118259000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr5:118255000-118265400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:118255200-118257600	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:118255200-118258800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr5:118255200-118261800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr5:118255200-118265600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:118255400-118256200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:118255400-118256800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr5:118255400-118257200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:118255400-118259000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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