Variant report
Variant | rs55875311 |
---|---|
Chromosome Location | chr18:28953742-28953743 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:32)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:32 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | FOXA2 | chr18:28953573-28953904 | HepG2 | liver: | n/a | n/a |
2 | MYBL2 | chr18:28953479-28954049 | HepG2 | liver: | n/a | n/a |
3 | MAFF | chr18:28953638-28954036 | HepG2 | liver: | n/a | n/a |
4 | NFIC | chr18:28953538-28953966 | HepG2 | liver: | n/a | n/a |
5 | RAD21 | chr18:28953725-28953914 | HepG2 | liver: | n/a | n/a |
6 | MAFK | chr18:28953698-28954030 | HepG2 | liver: | n/a | chr18:28953861-28953878 |
7 | NR2F2 | chr18:28953522-28954029 | HepG2 | liver: | n/a | n/a |
8 | FOSL2 | chr18:28953645-28953978 | HepG2 | liver: | n/a | chr18:28953828-28953837 |
9 | FOXA1 | chr18:28953477-28954010 | HepG2 | liver: | n/a | n/a |
10 | FOXA2 | chr18:28953652-28953920 | A549 | lung: | n/a | n/a |
11 | ARID3A | chr18:28953633-28953959 | HepG2 | liver: | n/a | n/a |
12 | FOXA2 | chr18:28953124-28954365 | HepG2 | liver: | n/a | chr18:28954335-28954347 |
13 | FOXA1 | chr18:28953409-28954110 | HepG2 | liver: | n/a | n/a |
14 | JUND | chr18:28953619-28953933 | HepG2 | liver: | n/a | chr18:28953828-28953837 |
15 | HNF4A | chr18:28953629-28953892 | HepG2 | liver: | n/a | chr18:28953815-28953830 |
16 | RXRA | chr18:28953580-28953977 | HepG2 | liver: | n/a | n/a |
17 | RFX5 | chr18:28953433-28953943 | HepG2 | liver: | n/a | n/a |
18 | JUND | chr18:28953724-28953890 | HepG2 | liver: | n/a | chr18:28953828-28953837 |
19 | SMC3 | chr18:28953737-28953975 | HepG2 | liver: | n/a | n/a |
20 | CHD2 | chr18:28953662-28953829 | HepG2 | liver: | n/a | n/a |
21 | MAX | chr18:28953713-28953928 | HepG2 | liver: | n/a | chr18:28953866-28953875 |
22 | CEBPB | chr18:28953685-28954012 | HepG2 | liver: | n/a | n/a |
23 | CEBPB | chr18:28953741-28953932 | HepG2 | liver: | n/a | n/a |
24 | SP1 | chr18:28953532-28954006 | HepG2 | liver: | n/a | chr18:28953826-28953840 chr18:28953827-28953836 chr18:28953826-28953835 |
25 | SIN3AK20 | chr18:28953739-28953884 | HepG2 | liver: | n/a | n/a |
26 | FOXA1 | chr18:28953478-28954045 | HepG2 | liver: | n/a | n/a |
27 | POLR2A | chr18:28953684-28953747 | MCF10A-Er-Src | breast: | n/a | n/a |
28 | MAX | chr18:28953510-28954042 | HepG2 | liver: | n/a | chr18:28953866-28953875 |
29 | MXI1 | chr18:28953634-28954011 | HepG2 | liver: | n/a | n/a |
30 | EP300 | chr18:28953596-28954060 | HepG2 | liver: | n/a | chr18:28953813-28953823 |
31 | FOXA1 | chr18:28953428-28954089 | HepG2 | liver: | n/a | n/a |
32 | MAFK | chr18:28953721-28954004 | HepG2 | liver: | n/a | chr18:28953861-28953878 |
No data |
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Variant related genes | Relation type |
---|---|
DSG4 | TF binding region |
rs_ID | r2[population] |
---|---|
rs16961690 | 1.00[AMR][1000 genomes] |
rs56679723 | 1.00[AMR][1000 genomes] |
rs57920047 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60921765 | 1.00[AMR][1000 genomes] |
rs73408401 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410232 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410250 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410260 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410275 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410279 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs8092897 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066692 | chr18:28856066-29190505 | Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
2 | nsv543674 | chr18:28856066-29190505 | Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
3 | nsv916545 | chr18:28898800-29166364 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr18:28951800-28954600 | Enhancers | HepG2 | liver |
2 | chr18:28953400-28954400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |