Variant report

Variant	rs55875625
Chromosome Location	chr18:24441786-24441787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1058427	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11661147	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11661256	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11662880	0.89[AFR][1000 genomes]
rs12963250	0.89[AFR][1000 genomes]
rs12968026	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1595254	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16942763	0.89[AFR][1000 genomes]
rs16942806	0.89[AFR][1000 genomes]
rs16942835	0.89[AFR][1000 genomes]
rs16958776	0.89[AFR][1000 genomes]
rs17614110	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35248760	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67207056	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67461489	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68036122	0.89[AFR][1000 genomes]
rs72878776	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24423600-24443200	Weak transcription	Psoas Muscle	Psoas
2	chr18:24427600-24442200	Weak transcription	Ovary	ovary
3	chr18:24427800-24443000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr18:24431400-24442000	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr18:24435000-24443000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:24436400-24443000	Weak transcription	Brain Angular Gyrus	brain
7	chr18:24436600-24442000	Weak transcription	Brain Hippocampus Middle	brain
8	chr18:24436600-24442400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr18:24440600-24442200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr18:24441200-24442000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr18:24441200-24442000	Weak transcription	Brain Anterior Caudate	brain
12	chr18:24441200-24443800	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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