Variant report

Variant	rs558794091
Chromosome Location	chr11:35054321-35054322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35050379..35055023-chr11:35058548..35063780,5	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35039800-35059200	Weak transcription	Pancreas	Pancrea
2	chr11:35049600-35054800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:35050600-35054400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:35051000-35055400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:35051200-35055400	Enhancers	Primary T cells from cord blood	blood
6	chr11:35051200-35056000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:35051600-35054600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:35051600-35054600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:35051600-35055400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:35051600-35055400	Enhancers	Placenta	Placenta
11	chr11:35051800-35055600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:35052000-35054400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:35052200-35055000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:35052200-35055400	Enhancers	HMEC	breast
15	chr11:35052200-35056400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:35052200-35056600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:35052400-35061800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:35052600-35055000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:35052600-35055400	Enhancers	GM12878-XiMat	blood
20	chr11:35052800-35054400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:35052800-35054400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:35052800-35054600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:35052800-35054600	Enhancers	NHDF-Ad	bronchial
24	chr11:35052800-35055200	Enhancers	NHEK	skin
25	chr11:35052800-35057000	Weak transcription	Aorta	Aorta
26	chr11:35052800-35061800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:35052800-35066800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:35053000-35055800	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:35053000-35056000	Enhancers	K562	blood
30	chr11:35053000-35056200	Enhancers	Hela-S3	cervix
31	chr11:35053000-35056400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:35053000-35057000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:35053000-35057800	Weak transcription	Psoas Muscle	Psoas
34	chr11:35053000-35060600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:35053000-35062000	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:35053200-35056800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:35053200-35057000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:35053200-35057000	Weak transcription	HSMMtube	muscle
39	chr11:35053200-35061800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:35053400-35055000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:35053600-35057000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:35053800-35054600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:35053800-35054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:35053800-35054800	Enhancers	Fetal Lung	lung
45	chr11:35053800-35056600	Weak transcription	HSMM	muscle
46	chr11:35053800-35056600	Weak transcription	HUVEC	blood vessel
47	chr11:35053800-35056800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:35053800-35060200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:35054000-35056800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:35054000-35056800	Weak transcription	Monocytes-CD14+_RO01746	blood

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