Variant report

Variant	rs55879758
Chromosome Location	chr1:216915724-216915725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1126020	1.00[EUR][1000 genomes]
rs17043992	1.00[EUR][1000 genomes]
rs2813697	1.00[EUR][1000 genomes]
rs2813698	1.00[EUR][1000 genomes]
rs2818749	1.00[EUR][1000 genomes]
rs73093969	1.00[EUR][1000 genomes]
rs74141644	1.00[EUR][1000 genomes]
rs7515296	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7529981	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	esv3391131	chr1:216913679-216915827	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216914000-216916200	Weak transcription	Fetal Heart	heart
4	chr1:216914200-216917800	Weak transcription	Fetal Brain Female	brain
5	chr1:216914400-216923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:216915000-216916200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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