Variant report

Variant	rs55882211
Chromosome Location	chr14:32902163-32902164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:32902151-32902348	MCF10A-Er-Src	breast:	n/a	n/a
2	E2F4	chr14:32902080-32902217	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr14:32902152-32902291	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
AKAP6	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17099069	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32895200-32902200	Enhancers	Brain Hippocampus Middle	brain
3	chr14:32896800-32903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:32897600-32908400	Weak transcription	Fetal Brain Female	brain
5	chr14:32898000-32902600	Weak transcription	Brain Germinal Matrix	brain
6	chr14:32898000-32906200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:32898200-32908200	Weak transcription	Right Atrium	heart
8	chr14:32898400-32902200	Weak transcription	Esophagus	oesophagus
9	chr14:32898400-32902800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:32898400-32903600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:32898400-32908400	Weak transcription	Psoas Muscle	Psoas
12	chr14:32899000-32902600	Weak transcription	Right Ventricle	heart
13	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
14	chr14:32899600-32906200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:32899800-32902200	Weak transcription	HSMMtube	muscle
16	chr14:32899800-32902600	Weak transcription	K562	blood
17	chr14:32899800-32907400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:32900000-32902200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:32900000-32902200	Weak transcription	HSMM	muscle
20	chr14:32900000-32902200	Weak transcription	Osteobl	bone
21	chr14:32900000-32905800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr14:32900200-32902400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:32901000-32902400	Enhancers	Colon Smooth Muscle	Colon
24	chr14:32901800-32902200	Enhancers	GM12878-XiMat	blood
25	chr14:32901800-32902600	Active TSS	Ovary	ovary
26	chr14:32901800-32902600	Enhancers	Rectal Smooth Muscle	rectum
27	chr14:32901800-32903200	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr14:32901800-32903400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr14:32901800-32904200	Enhancers	Brain Angular Gyrus	brain
30	chr14:32901800-32907800	Active TSS	Aorta	Aorta
31	chr14:32902000-32902200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:32902000-32902200	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr14:32902000-32902400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:32902000-32902400	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr14:32902000-32902400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr14:32902000-32902600	Enhancers	Primary B cells from peripheral blood	blood
37	chr14:32902000-32902800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:32902000-32902800	Enhancers	Fetal Heart	heart
39	chr14:32902000-32903000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:32902000-32903000	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr14:32902000-32903000	Enhancers	Left Ventricle	heart
42	chr14:32902000-32903000	Enhancers	Small Intestine	intestine
43	chr14:32902000-32903400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:32902000-32903400	Enhancers	Fetal Intestine Small	intestine
45	chr14:32902000-32904400	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links