Variant report

Variant	rs55884889
Chromosome Location	chr1:71348786-71348787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71347287..71350966-chr1:71352408..71354626,3	K562	blood:
2	chr1:71340625..71342302-chr1:71347493..71349338,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10889891	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10889892	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11209705	0.91[ASN][1000 genomes]
rs11803673	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11810467	0.91[ASN][1000 genomes]
rs12026099	0.91[ASN][1000 genomes]
rs12026456	0.91[ASN][1000 genomes]
rs12034333	0.90[ASN][1000 genomes]
rs12040186	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12049445	0.91[ASN][1000 genomes]
rs12049500	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1335002	0.80[ASN][1000 genomes]
rs1591386	0.80[ASN][1000 genomes]
rs17131473	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17131476	0.95[ASN][1000 genomes]
rs17131485	0.99[ASN][1000 genomes]
rs1889598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1932050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2068652	0.99[ASN][1000 genomes]
rs2152121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2152122	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2152123	1.00[AMR][1000 genomes]
rs2782768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2782769	1.00[AMR][1000 genomes]
rs2782770	0.80[ASN][1000 genomes]
rs2782771	1.00[AMR][1000 genomes]
rs2782772	1.00[AMR][1000 genomes]
rs2820540	1.00[EUR][1000 genomes]
rs2820541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2820542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34087524	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34745168	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35615554	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36021131	0.99[ASN][1000 genomes]
rs6661453	0.91[ASN][1000 genomes]
rs6684573	0.95[ASN][1000 genomes]
rs74086786	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74086973	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74086974	0.90[ASN][1000 genomes]
rs74086976	0.90[ASN][1000 genomes]
rs74086980	0.90[ASN][1000 genomes]
rs74086985	0.95[ASN][1000 genomes]
rs74086993	0.95[ASN][1000 genomes]
rs915220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71346000-71357000	Weak transcription	Adipose Nuclei	Adipose
2	chr1:71348200-71354400	Weak transcription	Aorta	Aorta

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