Variant report

Variant	rs55888146
Chromosome Location	chr11:72075560-72075561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17162091	0.85[ASN][1000 genomes]
rs17847219	0.85[ASN][1000 genomes]
rs2365379	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55907154	0.90[ASN][1000 genomes]
rs55970551	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55989089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57191897	0.96[ASN][1000 genomes]
rs57275811	0.81[ASN][1000 genomes]
rs59755180	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60549044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122350	0.85[ASN][1000 genomes]
rs714548	0.85[ASN][1000 genomes]
rs73532651	0.85[ASN][1000 genomes]
rs7941873	0.90[ASN][1000 genomes]
rs7947973	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72033000-72075600	Weak transcription	A549	lung
2	chr11:72038400-72076600	Weak transcription	Liver	Liver
3	chr11:72039800-72077400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:72041800-72076000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:72043200-72076600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:72045800-72094600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:72050000-72092200	Weak transcription	Pancreas	Pancrea
8	chr11:72059800-72086800	Weak transcription	Fetal Brain Male	brain
9	chr11:72061000-72075600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:72061200-72077800	Weak transcription	Brain Angular Gyrus	brain
11	chr11:72061400-72088600	Weak transcription	Ovary	ovary
12	chr11:72061400-72089800	Weak transcription	Brain Anterior Caudate	brain
13	chr11:72061400-72090000	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:72061400-72092200	Weak transcription	Gastric	stomach
15	chr11:72062400-72076200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:72062600-72089600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:72064000-72090000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:72064400-72080000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:72064400-72090000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:72064800-72088800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:72064800-72089800	Weak transcription	HSMMtube	muscle
22	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
23	chr11:72065800-72076000	Weak transcription	GM12878-XiMat	blood
24	chr11:72066200-72091200	Weak transcription	Aorta	Aorta
25	chr11:72066600-72095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:72067000-72092000	Weak transcription	HepG2	liver
27	chr11:72067400-72090800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:72067800-72089600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:72067800-72090000	Weak transcription	Right Ventricle	heart
30	chr11:72068200-72084000	Weak transcription	Lung	lung
31	chr11:72069000-72090000	Weak transcription	NHEK	skin
32	chr11:72069400-72077000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:72069400-72089600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:72069600-72076400	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:72069600-72090000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:72069600-72090200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:72069600-72090200	Weak transcription	Placenta	Placenta
39	chr11:72069600-72094600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:72069800-72077200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:72069800-72078400	Weak transcription	Dnd41	blood
42	chr11:72069800-72084000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:72069800-72089200	Weak transcription	Spleen	Spleen
44	chr11:72069800-72089400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:72069800-72098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:72070200-72077000	Weak transcription	Fetal Stomach	stomach
47	chr11:72070200-72084000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:72070200-72089800	Weak transcription	Brain Substantia Nigra	brain
49	chr11:72070400-72076600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:72070400-72077000	Weak transcription	Primary T cells from cord blood	blood

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