Variant report

Variant	rs558893691
Chromosome Location	chr9:72514432-72514433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72513695..72515625-chr9:72515816..72518282,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893439	chr9:72500956-72568962	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524309	chr9:72514177-72527688	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72511800-72514600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:72512000-72515800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:72512400-72515600	Enhancers	A549	lung
4	chr9:72512400-72515800	Enhancers	Osteobl	bone
5	chr9:72512400-72516000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:72512600-72515200	Enhancers	Brain Cingulate Gyrus	brain
7	chr9:72512600-72515400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:72512600-72515400	Enhancers	Brain Hippocampus Middle	brain
9	chr9:72512600-72515600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:72512600-72515600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:72512600-72515600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:72512600-72515600	Enhancers	Hela-S3	cervix
13	chr9:72512600-72515800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:72512600-72515800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:72512600-72515800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr9:72512600-72515800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:72512600-72515800	Enhancers	HMEC	breast
18	chr9:72512600-72515800	Enhancers	NHDF-Ad	bronchial
19	chr9:72512600-72515800	Enhancers	NHEK	skin
20	chr9:72512800-72515600	Enhancers	Brain Substantia Nigra	brain
21	chr9:72512800-72515600	Enhancers	HSMMtube	muscle
22	chr9:72512800-72515800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:72512800-72515800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:72512800-72515800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:72512800-72515800	Enhancers	HSMM	muscle
26	chr9:72512800-72515800	Enhancers	NH-A	brain
27	chr9:72512800-72515800	Enhancers	NHLF	lung
28	chr9:72513000-72514800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:72513000-72515200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:72513000-72515600	Enhancers	Brain Angular Gyrus	brain
31	chr9:72513000-72515800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:72513000-72515800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:72513200-72515200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:72513400-72514600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:72513400-72515400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:72513800-72515600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:72514000-72514600	Flanking Active TSS	HUVEC	blood vessel
38	chr9:72514000-72515400	Enhancers	Brain Anterior Caudate	brain
39	chr9:72514000-72515400	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr9:72514000-72539600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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