Variant report

Variant	rs55892143
Chromosome Location	chr18:44854078-44854079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs16950652	0.92[EUR][1000 genomes]
rs16950662	1.00[EUR][1000 genomes]
rs16950719	1.00[EUR][1000 genomes]
rs16950736	1.00[EUR][1000 genomes]
rs16950741	1.00[EUR][1000 genomes]
rs16950744	1.00[EUR][1000 genomes]
rs16950754	1.00[EUR][1000 genomes]
rs16950767	1.00[EUR][1000 genomes]
rs16950777	1.00[EUR][1000 genomes]
rs28455576	0.92[EUR][1000 genomes]
rs28737231	0.92[EUR][1000 genomes]
rs55687418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55698938	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55704228	1.00[EUR][1000 genomes]
rs55802477	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55813572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825078	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840418	1.00[ASN][1000 genomes]
rs55977647	1.00[EUR][1000 genomes]
rs56014831	1.00[EUR][1000 genomes]
rs56077098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132373	1.00[ASN][1000 genomes]
rs56287570	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56317203	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58684150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60893527	0.83[AMR][1000 genomes]
rs66485937	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66914705	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67119810	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67123015	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67514853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67822267	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906489	1.00[EUR][1000 genomes]
rs72906494	1.00[EUR][1000 genomes]
rs72906498	1.00[EUR][1000 genomes]
rs72907225	1.00[ASN][1000 genomes]
rs72907230	1.00[ASN][1000 genomes]
rs72907240	1.00[ASN][1000 genomes]
rs72907243	1.00[ASN][1000 genomes]
rs72907247	1.00[ASN][1000 genomes]
rs72907254	1.00[ASN][1000 genomes]
rs72907261	1.00[ASN][1000 genomes]
rs72907269	1.00[ASN][1000 genomes]
rs72907290	1.00[ASN][1000 genomes]
rs72907298	1.00[ASN][1000 genomes]
rs72908505	1.00[EUR][1000 genomes]
rs72908507	1.00[EUR][1000 genomes]
rs72908508	1.00[EUR][1000 genomes]
rs72908518	1.00[EUR][1000 genomes]
rs72908529	1.00[EUR][1000 genomes]
rs72908533	1.00[EUR][1000 genomes]
rs72908537	1.00[EUR][1000 genomes]
rs72908538	1.00[EUR][1000 genomes]
rs72908542	1.00[EUR][1000 genomes]
rs72908558	1.00[EUR][1000 genomes]
rs72908572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908588	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909204	1.00[ASN][1000 genomes]
rs72909212	1.00[ASN][1000 genomes]
rs72909229	1.00[ASN][1000 genomes]
rs72909252	1.00[ASN][1000 genomes]
rs72909254	1.00[ASN][1000 genomes]
rs72909289	1.00[ASN][1000 genomes]
rs72910504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910538	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910540	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72910544	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910547	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910552	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910554	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911203	1.00[ASN][1000 genomes]
rs72911205	1.00[ASN][1000 genomes]
rs72911207	1.00[ASN][1000 genomes]
rs72912419	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912427	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912445	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912456	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912458	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912473	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912475	1.00[ASN][1000 genomes]
rs72912490	1.00[ASN][1000 genomes]
rs72912494	1.00[ASN][1000 genomes]
rs72913164	1.00[ASN][1000 genomes]
rs72913166	1.00[ASN][1000 genomes]
rs72914421	0.83[AMR][1000 genomes]
rs72914425	0.83[AMR][1000 genomes]
rs72914428	0.83[AMR][1000 genomes]
rs72914433	0.83[AMR][1000 genomes]
rs72914435	0.83[AMR][1000 genomes]
rs72914437	0.83[AMR][1000 genomes]
rs72914847	1.00[EUR][1000 genomes]
rs72914848	1.00[EUR][1000 genomes]
rs72914856	1.00[EUR][1000 genomes]
rs72914857	1.00[EUR][1000 genomes]
rs72914862	1.00[EUR][1000 genomes]
rs8087053	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44839800-44858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:44854000-44854400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:44854000-44854800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:44854000-44855000	Enhancers	H9 Cell Line	embryonic stem cell

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