Variant report

Variant	rs55892403
Chromosome Location	chr11:56062207-56062208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:56062206-56062406	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR8H1	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12272629	0.94[EUR][1000 genomes]
rs17541821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17541876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17613345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55706115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56077409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56149224	1.00[AFR][1000 genomes]
rs61887243	1.00[AFR][1000 genomes]
rs61888282	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888286	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888309	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61903482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903483	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903530	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61903531	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61903536	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61903537	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61903541	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7106248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7119614	1.00[AFR][1000 genomes]
rs7121384	0.88[EUR][1000 genomes]
rs7121385	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7124023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7125690	0.91[EUR][1000 genomes]
rs716103	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs716104	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7932621	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7951134	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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