Variant report

Variant	rs559063082
Chromosome Location	chr5:97675101-97675102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv1831511	chr5:97666860-97678414	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	esv1803610	chr5:97670855-97678414	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv1829863	chr5:97674522-97678414	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv1830760	chr5:97674522-97678414	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
8	esv1842306	chr5:97674522-97678414	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97672800-97676400	Weak transcription	Osteobl	bone
2	chr5:97673600-97676800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97674400-97675400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:97674400-97675600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:97674800-97675200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:97674800-97675400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:97675000-97675200	ZNF genes & repeats	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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