Variant report

Variant rs55914643
Chromosome Location chr17:43502012-43502013
allele A/C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43484400-43502600 Weak transcription Fetal Lung lung
2 chr17:43484600-43502200 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr17:43488800-43505400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr17:43489600-43505400 Weak transcription Brain Hippocampus Middle brain
5 chr17:43490200-43503000 Weak transcription Adipose Nuclei Adipose
6 chr17:43490200-43505600 Weak transcription Thymus Thymus
7 chr17:43493200-43503800 Weak transcription Spleen Spleen
8 chr17:43496400-43502200 Weak transcription NHEK skin
9 chr17:43496600-43502200 Weak transcription Stomach Mucosa stomach
10 chr17:43496600-43505800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr17:43497200-43502600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr17:43499800-43502600 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr17:43500600-43503000 Active TSS Rectal Mucosa Donor 29 rectum
14 chr17:43500800-43502200 Transcr. at gene 5' and 3' Fetal Intestine Small intestine
15 chr17:43500800-43503000 Active TSS Duodenum Mucosa Duodenum
16 chr17:43501000-43502400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr17:43501000-43503000 Active TSS Duodenum Smooth Muscle Duodenum
18 chr17:43501000-43503000 Active TSS Rectal Smooth Muscle rectum
19 chr17:43501000-43503600 Active TSS Colonic Mucosa Colon
20 chr17:43501200-43502200 Enhancers ES-I3 Cell Line embryonic stem cell
21 chr17:43501200-43502400 Enhancers HUES48 Cell Line embryonic stem cell
22 chr17:43501200-43502600 Enhancers Primary hematopoietic stem cells short term culture blood
23 chr17:43501200-43502600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr17:43501200-43503000 Active TSS Fetal Intestine Large intestine
25 chr17:43501200-43503000 Active TSS Rectal Mucosa Donor 31 rectum
26 chr17:43501400-43502200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
27 chr17:43501400-43502200 Bivalent Enhancer Fetal Muscle Trunk muscle
28 chr17:43501400-43502200 Active TSS Fetal Stomach stomach
29 chr17:43501400-43502200 Enhancers Gastric stomach
30 chr17:43501400-43502200 Enhancers Lung lung
31 chr17:43501400-43502400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
32 chr17:43501400-43502600 Enhancers H1 Cell Line embryonic stem cell
33 chr17:43501400-43502600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
34 chr17:43501400-43502800 Enhancers Pancreas Pancrea
35 chr17:43501400-43503000 Active TSS Sigmoid Colon Sigmoid Colon
36 chr17:43501400-43503400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr17:43501400-43504200 Enhancers Primary monocytes fromperipheralblood blood
38 chr17:43501600-43502200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr17:43501600-43502400 Enhancers HMEC breast
40 chr17:43501600-43502600 Enhancers Fetal Heart heart
41 chr17:43501600-43502800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr17:43501600-43503000 Active TSS Left Ventricle heart
43 chr17:43501600-43503200 Active TSS Right Atrium heart
44 chr17:43501800-43502200 Enhancers H9 Cell Line embryonic stem cell
45 chr17:43501800-43502200 Flanking Active TSS HUES6 Cell Line embryonic stem cell
46 chr17:43501800-43502200 Enhancers iPS-20b Cell Line embryonic stem cell
47 chr17:43501800-43502200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr17:43501800-43502600 Enhancers iPS-18 Cell Line embryonic stem cell
49 chr17:43501800-43502600 Weak transcription Skeletal Muscle Male skeletal muscle
50 chr17:43501800-43502600 Weak transcription Monocytes-CD14+_RO01746 blood

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