Variant report

Variant	rs55918054
Chromosome Location	chr5:98340872-98340873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98334839..98337187-chr5:98340371..98342752,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17166397	1.00[AMR][1000 genomes]
rs17166527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166576	1.00[AMR][1000 genomes]
rs17166582	1.00[AMR][1000 genomes]
rs55842563	1.00[AMR][1000 genomes]
rs56037221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56301306	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56367612	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56380839	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57883072	1.00[AMR][1000 genomes]
rs58634056	1.00[AMR][1000 genomes]
rs59602127	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60347076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60955929	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863847	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890801	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890810	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs709389	0.82[AFR][1000 genomes]
rs73155487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157487	1.00[AFR][1000 genomes]
rs73157490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7701147	0.99[AFR][1000 genomes]
rs7705736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7717482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7717655	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7724760	1.00[AMR][1000 genomes]
rs7726071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1791809	chr5:98333129-98346305	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv1797550	chr5:98333129-98346514	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv1847033	chr5:98333129-98346514	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv599090	chr5:98340383-98346514	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98339800-98341000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr5:98339800-98343600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:98340000-98341000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:98340000-98341600	Enhancers	GM12878-XiMat	blood
5	chr5:98340000-98342000	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:98340200-98341600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:98340200-98342200	Enhancers	Primary B cells from cord blood	blood
8	chr5:98340600-98342400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:98340800-98341000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:98340800-98341200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr5:98340800-98341600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:98340800-98342000	Enhancers	HepG2	liver
13	chr5:98340800-98342400	Enhancers	Adipose Nuclei	Adipose
14	chr5:98340800-98343600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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