Variant report

Variant	rs55922804
Chromosome Location	chr14:77749687-77749688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77741661..77744211-chr14:77747237..77749936,2	MCF-7	breast:
2	chr14:77748044..77750512-chr14:77785605..77787632,2	MCF-7	breast:
3	chr14:77745441..77747775-chr14:77749161..77750911,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100577	Chromatin interaction
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17105658	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28988622	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45561437	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55673423	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56067603	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72679184	0.81[ASN][1000 genomes]
rs72679190	0.81[ASN][1000 genomes]
rs72679191	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72681205	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681209	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681214	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681222	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681243	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77739000-77749800	Weak transcription	HUVEC	blood vessel
2	chr14:77739600-77775600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:77740200-77750800	Weak transcription	Fetal Thymus	thymus
4	chr14:77740200-77766800	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:77740200-77769800	Weak transcription	Small Intestine	intestine
6	chr14:77740400-77766000	Weak transcription	Stomach Mucosa	stomach
7	chr14:77740800-77758000	Strong transcription	Fetal Stomach	stomach
8	chr14:77740800-77766200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:77741000-77750000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr14:77741000-77750400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:77741000-77767400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:77741400-77753600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:77741800-77752000	Weak transcription	Psoas Muscle	Psoas
14	chr14:77741800-77755400	Strong transcription	Fetal Muscle Leg	muscle
15	chr14:77741800-77757200	Strong transcription	Liver	Liver
16	chr14:77741800-77758600	Strong transcription	Fetal Muscle Trunk	muscle
17	chr14:77741800-77773600	Weak transcription	GM12878-XiMat	blood
18	chr14:77742000-77756800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:77742000-77757400	Weak transcription	Right Atrium	heart
20	chr14:77742000-77766600	Strong transcription	Placenta	Placenta
21	chr14:77742200-77755000	Strong transcription	Lung	lung
22	chr14:77742200-77757600	Strong transcription	Ovary	ovary
23	chr14:77742200-77767600	Strong transcription	Stomach Smooth Muscle	stomach
24	chr14:77742400-77752200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:77742400-77753000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:77742400-77755000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:77742400-77755200	Strong transcription	Brain Cingulate Gyrus	brain
28	chr14:77742400-77766400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:77742400-77766400	Strong transcription	Adipose Nuclei	Adipose
30	chr14:77742400-77780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr14:77742600-77752200	Strong transcription	Pancreas	Pancrea
32	chr14:77742600-77753200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:77742600-77753600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:77742600-77755000	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr14:77742600-77755200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr14:77742600-77755200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:77742600-77756600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr14:77742600-77757400	Strong transcription	Brain Substantia Nigra	brain
39	chr14:77742600-77759400	Strong transcription	Brain Anterior Caudate	brain
40	chr14:77742600-77759600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr14:77742600-77766600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:77742800-77754400	Strong transcription	Aorta	Aorta
43	chr14:77742800-77755400	Strong transcription	Brain Hippocampus Middle	brain
44	chr14:77742800-77755400	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:77742800-77757200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr14:77743200-77760400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:77743400-77754400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:77743400-77754800	Strong transcription	A549	lung
49	chr14:77743400-77757600	Strong transcription	Left Ventricle	heart
50	chr14:77744000-77771400	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links