Variant report

Variant	rs55924435
Chromosome Location	chr7:138115412-138115413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138114924..138116896-chr7:138118468..138121026,2	K562	blood:
2	chr7:138113656..138118037-chr7:138143225..138147553,4	K562	blood:
3	chr7:138114924..138116891-chr7:138118202..138121026,2	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10225876	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10246196	0.91[EUR][1000 genomes]
rs10250362	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12533792	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12668679	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12668708	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17169596	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17169597	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2353346	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353348	0.82[ASN][1000 genomes]
rs2883142	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4574789	0.82[ASN][1000 genomes]
rs4620232	0.82[ASN][1000 genomes]
rs4626544	0.82[ASN][1000 genomes]
rs4732317	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55875241	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56977478	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62491063	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62491064	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62491077	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62491079	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62491082	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6467769	0.82[ASN][1000 genomes]
rs6467772	0.82[ASN][1000 genomes]
rs6947999	0.82[ASN][1000 genomes]
rs6953860	0.82[ASN][1000 genomes]
rs6962241	0.81[ASN][1000 genomes]
rs6962854	0.82[ASN][1000 genomes]
rs6964218	0.82[ASN][1000 genomes]
rs6968570	0.82[ASN][1000 genomes]
rs6973057	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6980108	0.80[ASN][1000 genomes]
rs752158	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7793703	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138112600-138117000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr7:138113800-138117200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:138114000-138116400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr7:138114200-138117200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:138114600-138116600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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