Variant report

Variant	rs55936005
Chromosome Location	chr1:94140767-94140768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94137739..94141828-chr1:94278104..94280351,3	MCF-7	breast:
2	chr1:94139377..94141993-chr1:94312078..94313626,2	MCF-7	breast:
3	chr1:94130556..94132470-chr1:94139912..94142800,2	K562	blood:

Variant related genes	Relation type
ENSG00000260464	Chromatin interaction
ENSG00000211575	Chromatin interaction
ENSG00000137936	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12094668	1.00[EUR][1000 genomes]
rs13373766	1.00[AMR][1000 genomes]
rs55670441	1.00[AMR][1000 genomes]
rs55742446	1.00[AMR][1000 genomes]
rs57291093	1.00[AMR][1000 genomes]
rs57418286	1.00[EUR][1000 genomes]
rs59250599	1.00[AMR][1000 genomes]
rs60514624	1.00[EUR][1000 genomes]
rs6681200	1.00[EUR][1000 genomes]
rs74101611	1.00[EUR][1000 genomes]
rs74101616	1.00[EUR][1000 genomes]
rs74101617	1.00[EUR][1000 genomes]
rs74101657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101663	1.00[AMR][1000 genomes]
rs74101667	1.00[AMR][1000 genomes]
rs74101670	1.00[AMR][1000 genomes]
rs9782878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482370	chr1:94000799-94183692	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2755338	chr1:94059579-94176079	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94127400-94143800	Genic enhancers	HMEC	breast
2	chr1:94127400-94144000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:94129200-94144800	Weak transcription	GM12878-XiMat	blood
4	chr1:94130800-94141000	Genic enhancers	HSMM	muscle
5	chr1:94131200-94144000	Genic enhancers	Placenta	Placenta
6	chr1:94131600-94143800	Genic enhancers	NHEK	skin
7	chr1:94132800-94141000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:94132800-94141800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:94132800-94141800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:94132800-94142400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:94132800-94142600	Enhancers	Adipose Nuclei	Adipose
12	chr1:94132800-94144600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:94133000-94141600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:94133000-94142000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:94133400-94141800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:94134400-94140800	Genic enhancers	Osteobl	bone
17	chr1:94135200-94141200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:94135200-94141400	Enhancers	Fetal Intestine Large	intestine
19	chr1:94135200-94142400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:94135400-94142800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:94136000-94144200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:94136000-94144800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:94136200-94141000	Weak transcription	Brain Angular Gyrus	brain
24	chr1:94136200-94141800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:94136400-94143000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:94137000-94142600	Enhancers	Fetal Lung	lung
27	chr1:94137400-94141000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:94137400-94141200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr1:94138200-94141000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:94138200-94142000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:94138200-94145000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:94138400-94141400	Enhancers	Duodenum Mucosa	Duodenum
33	chr1:94138400-94141600	Genic enhancers	A549	lung
34	chr1:94138400-94142600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:94138400-94144400	Genic enhancers	NHLF	lung
36	chr1:94138600-94141000	Weak transcription	Psoas Muscle	Psoas
37	chr1:94138600-94141000	Genic enhancers	Hela-S3	cervix
38	chr1:94138600-94141600	Weak transcription	Fetal Thymus	thymus
39	chr1:94138600-94145200	Weak transcription	Gastric	stomach
40	chr1:94138600-94145800	Weak transcription	Colonic Mucosa	Colon
41	chr1:94138600-94145800	Weak transcription	Fetal Stomach	stomach
42	chr1:94138800-94141000	Weak transcription	Spleen	Spleen
43	chr1:94138800-94141600	Genic enhancers	Muscle Satellite Cultured Cells	--
44	chr1:94139000-94145200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr1:94139200-94141000	Weak transcription	Aorta	Aorta
46	chr1:94139200-94141000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr1:94139200-94141000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:94139200-94142400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:94139200-94144800	Weak transcription	Primary B cells from peripheral blood	blood
50	chr1:94139200-94145200	Weak transcription	Rectal Smooth Muscle	rectum

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