Variant report

Variant	rs55937635
Chromosome Location	chr10:51036783-51036784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:51033722..51037906-chr10:51041660..51043995,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56040437	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61253147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131126	1.00[AMR][1000 genomes]
rs74131128	1.00[AMR][1000 genomes]
rs74131134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv895379	chr10:51022933-51187793	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51019800-51053400	Weak transcription	Small Intestine	intestine
2	chr10:51020400-51049600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:51021800-51039600	Weak transcription	Psoas Muscle	Psoas
4	chr10:51024000-51052800	Weak transcription	NHLF	lung
5	chr10:51024200-51053200	Weak transcription	Fetal Brain Male	brain
6	chr10:51024600-51054800	Weak transcription	Fetal Heart	heart
7	chr10:51025800-51037000	Strong transcription	Primary T cells from cord blood	blood
8	chr10:51025800-51047800	Weak transcription	HMEC	breast
9	chr10:51026200-51039000	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:51026200-51039600	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:51026400-51047200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:51027200-51038000	Weak transcription	HUVEC	blood vessel
13	chr10:51027800-51039400	Weak transcription	Esophagus	oesophagus
14	chr10:51028000-51039400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:51028000-51039600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:51028200-51039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:51028200-51039600	Weak transcription	Brain Substantia Nigra	brain
18	chr10:51028200-51039600	Weak transcription	Lung	lung
19	chr10:51028200-51046600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:51028200-51047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:51028200-51050000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:51028200-51053000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:51028200-51054600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:51028400-51039000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:51028400-51039400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:51028400-51039600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:51028400-51039600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:51028400-51039600	Weak transcription	Gastric	stomach
29	chr10:51028400-51039600	Weak transcription	K562	blood
30	chr10:51028400-51040200	Weak transcription	Right Ventricle	heart
31	chr10:51028400-51049600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:51028400-51053000	Weak transcription	Colonic Mucosa	Colon
33	chr10:51028400-51055000	Weak transcription	Spleen	Spleen
34	chr10:51028400-51056200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:51028600-51037600	Weak transcription	Liver	Liver
36	chr10:51028600-51039600	Weak transcription	Pancreas	Pancrea
37	chr10:51028600-51039600	Weak transcription	Thymus	Thymus
38	chr10:51028600-51040200	Weak transcription	Brain Anterior Caudate	brain
39	chr10:51028600-51051400	Weak transcription	Fetal Brain Female	brain
40	chr10:51029200-51040000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:51029400-51039400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr10:51029400-51039400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:51030400-51039400	Weak transcription	HepG2	liver
44	chr10:51030600-51039600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:51030800-51038000	Weak transcription	Fetal Kidney	kidney
46	chr10:51030800-51043800	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:51031000-51037800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:51031000-51038400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:51031000-51039400	Weak transcription	NHDF-Ad	bronchial
50	chr10:51031000-51043200	Weak transcription	A549	lung

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