Variant report

Variant	rs55938327
Chromosome Location	chr2:21209542-21209543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10495712	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392272	0.93[ASN][1000 genomes]
rs17397667	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801701	1.00[AFR][1000 genomes]
rs2337381	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4665788	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56142315	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120837	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120838	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120842	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120843	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120847	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120852	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62122481	0.93[ASN][1000 genomes]
rs68093099	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693	0.83[ASN][1000 genomes]
rs938848	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952275	0.90[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21206800-21210200	Enhancers	Stomach Smooth Muscle	stomach
2	chr2:21206800-21210800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:21207000-21209600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:21207000-21209800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:21207000-21214000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:21207200-21214600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:21207800-21209800	Enhancers	Fetal Muscle Leg	muscle
8	chr2:21208000-21210200	Enhancers	Adipose Nuclei	Adipose
9	chr2:21208600-21209600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:21208600-21209600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:21208600-21212000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:21208600-21214200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:21208600-21214200	Weak transcription	Aorta	Aorta
14	chr2:21208600-21214600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:21208800-21212200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:21209000-21212000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:21209400-21210200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:21209400-21210200	Enhancers	Colon Smooth Muscle	Colon
19	chr2:21209400-21210400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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