Variant report

Variant	rs55943951
Chromosome Location	chr2:181859702-181859703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181857164..181861064-chr2:181861512..181864728,5	K562	blood:
2	chr2:181854710..181856581-chr2:181858874..181861007,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55660649	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55806776	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs55999220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56066931	1.00[AMR][1000 genomes]
rs56227816	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56252601	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56386819	1.00[EUR][1000 genomes]
rs6706756	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6755739	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7585125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181846400-181868600	Weak transcription	Gastric	stomach
2	chr2:181846600-181872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:181847000-181862400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:181847000-181862800	Weak transcription	Placenta	Placenta
5	chr2:181847000-181870000	Weak transcription	Pancreas	Pancrea
6	chr2:181847000-181873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:181847400-181870000	Weak transcription	Right Ventricle	heart
8	chr2:181847600-181864200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:181847600-181868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr2:181849000-181862000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr2:181849000-181872800	Weak transcription	Fetal Intestine Large	intestine
12	chr2:181849200-181860000	Weak transcription	Fetal Intestine Small	intestine
13	chr2:181849400-181880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:181850000-181873000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr2:181850800-181869800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr2:181851000-181859800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr2:181851000-181861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:181851000-181866000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:181851000-181866200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:181851000-181866400	Weak transcription	Small Intestine	intestine
21	chr2:181851000-181870000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:181851000-181872200	Weak transcription	Left Ventricle	heart
23	chr2:181851200-181864000	Weak transcription	Brain Anterior Caudate	brain
24	chr2:181851200-181865600	Weak transcription	Fetal Brain Male	brain
25	chr2:181851200-181866600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr2:181851200-181876200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:181853000-181860600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr2:181853000-181865600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:181853000-181865800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr2:181853000-181869800	Weak transcription	Brain Angular Gyrus	brain
31	chr2:181853000-181869800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:181854000-181863000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:181854400-181862000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:181854600-181872800	Weak transcription	NHLF	lung
35	chr2:181855200-181860800	Weak transcription	NHEK	skin
36	chr2:181855200-181871000	Weak transcription	HUVEC	blood vessel
37	chr2:181855400-181863800	Weak transcription	K562	blood
38	chr2:181855600-181860000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr2:181855600-181872400	Weak transcription	Adipose Nuclei	Adipose
40	chr2:181856200-181860000	Strong transcription	NH-A	brain
41	chr2:181856200-181860200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr2:181856200-181870200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr2:181856400-181860000	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr2:181856400-181863000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr2:181856400-181863200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr2:181856600-181863000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr2:181856800-181859800	Weak transcription	Fetal Lung	lung
48	chr2:181856800-181862800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:181856800-181865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr2:181856800-181865600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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