Variant report

Variant	rs55950540
Chromosome Location	chr1:217100628-217100629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217095512..217097116-chr1:217098734..217100728,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1339209	1.00[ASN][1000 genomes]
rs17686927	1.00[ASN][1000 genomes]
rs17687489	1.00[ASN][1000 genomes]
rs2789723	1.00[ASN][1000 genomes]
rs2789727	1.00[ASN][1000 genomes]
rs2789728	1.00[ASN][1000 genomes]
rs2813662	1.00[ASN][1000 genomes]
rs34701053	1.00[ASN][1000 genomes]
rs6700612	1.00[ASN][1000 genomes]
rs74141707	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
2	chr1:217093400-217104800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:217097000-217102800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:217097800-217102000	Enhancers	Fetal Intestine Small	intestine
5	chr1:217098000-217102000	Enhancers	Fetal Intestine Large	intestine
6	chr1:217099200-217101800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:217099400-217101000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:217099400-217101000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:217099400-217101000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:217099600-217101000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:217099800-217101200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:217099800-217101800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:217100000-217101000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr1:217100000-217101000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:217100000-217101000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr1:217100000-217101000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr1:217100000-217101000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr1:217100000-217101000	Enhancers	Brain Substantia Nigra	brain
19	chr1:217100000-217101200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:217100000-217101200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:217100200-217101000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:217100600-217101000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:217100600-217101000	Enhancers	Brain Anterior Caudate	brain
24	chr1:217100600-217101200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:217100600-217101200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:217100600-217102000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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