Variant report

Variant	rs559533938
Chromosome Location	chr19:36813985-36813986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520020	chr19:36721368-36822594	Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1063208	chr19:36743461-36847486	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1056901	chr19:36749658-36847486	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1061054	chr19:36751703-36847486	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1055260	chr19:36752221-36847486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1056850	chr19:36752663-36847486	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1064983	chr19:36752663-36847625	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1057579	chr19:36752663-36847822	Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv1825146	chr19:36800927-36846993	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1837043	chr19:36800927-36846993	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv2474	chr19:36804469-36865415	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv2763143	chr19:36805705-36847498	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1059568	chr19:36806475-36847864	Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv1823621	chr19:36807288-36845863	Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1064343	chr19:36807288-36853102	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv961213	chr19:36813769-36814380	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36799400-36816400	Weak transcription	Primary T cells from cord blood	blood
2	chr19:36800600-36816400	Weak transcription	Ovary	ovary
3	chr19:36800600-36816600	Weak transcription	Spleen	Spleen
4	chr19:36800800-36816400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr19:36800800-36822000	Weak transcription	Psoas Muscle	Psoas
6	chr19:36801000-36816400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr19:36801200-36814400	Weak transcription	Primary B cells from cord blood	blood
8	chr19:36801200-36816000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr19:36801200-36816200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr19:36801200-36816400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr19:36801200-36816400	Weak transcription	Adipose Nuclei	Adipose
12	chr19:36801200-36816600	Weak transcription	Right Ventricle	heart
13	chr19:36801200-36817000	Weak transcription	Brain Anterior Caudate	brain
14	chr19:36801200-36817000	Weak transcription	Fetal Kidney	kidney
15	chr19:36801200-36817600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr19:36802200-36815800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr19:36802800-36816400	Weak transcription	Brain Hippocampus Middle	brain
18	chr19:36804000-36820600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr19:36804800-36820800	Weak transcription	Brain Angular Gyrus	brain
20	chr19:36805000-36816600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr19:36805200-36816400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr19:36805400-36822000	Weak transcription	HSMMtube	muscle
23	chr19:36805600-36815800	Weak transcription	NHEK	skin
24	chr19:36805800-36815200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr19:36805800-36815800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:36805800-36815800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr19:36805800-36816400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr19:36805800-36821000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr19:36806400-36820600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr19:36806600-36821000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr19:36806600-36822000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr19:36806800-36820000	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr19:36807000-36816400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr19:36808200-36816400	Weak transcription	Osteobl	bone
35	chr19:36808600-36820000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr19:36810000-36816600	Weak transcription	Colon Smooth Muscle	Colon
37	chr19:36810000-36820200	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr19:36810400-36814000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr19:36810400-36820800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr19:36810600-36814200	Weak transcription	NH-A	brain
41	chr19:36810600-36814600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr19:36810600-36816200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr19:36810600-36816400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr19:36810600-36816400	Weak transcription	Fetal Intestine Large	intestine
45	chr19:36810600-36816600	Weak transcription	Esophagus	oesophagus
46	chr19:36810600-36820600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr19:36810800-36814400	Weak transcription	Fetal Intestine Small	intestine
48	chr19:36810800-36816400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr19:36810800-36816600	Weak transcription	Placenta	Placenta
50	chr19:36811400-36814800	Weak transcription	Brain Germinal Matrix	brain

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