Variant report

Variant	rs55954316
Chromosome Location	chr4:8274608-8274609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8268867..8271118-chr4:8273119..8275755,2	MCF-7	breast:
2	chr4:8266213..8269192-chr4:8274192..8276756,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11721861	0.80[ASN][1000 genomes]
rs11721894	0.80[ASN][1000 genomes]
rs11726756	0.80[ASN][1000 genomes]
rs11727999	0.82[EUR][1000 genomes]
rs11733786	0.97[ASN][1000 genomes]
rs11733787	0.97[ASN][1000 genomes]
rs12639755	0.97[ASN][1000 genomes]
rs55771022	0.97[ASN][1000 genomes]
rs55784731	0.97[ASN][1000 genomes]
rs55841178	0.97[ASN][1000 genomes]
rs55858728	0.88[ASN][1000 genomes]
rs56209613	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56357949	0.97[ASN][1000 genomes]
rs62286489	0.96[ASN][1000 genomes]
rs7340939	0.87[ASN][1000 genomes]
rs7340942	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010809	chr4:8097627-8292324	Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv461216	chr4:8154534-8276411	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv593626	chr4:8154534-8276411	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv878594	chr4:8154534-8286916	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv878597	chr4:8171401-8294196	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv829853	chr4:8172065-8320868	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv878599	chr4:8195705-8293398	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv593627	chr4:8202211-8311043	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv878600	chr4:8209447-8312158	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
13	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
14	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
15	nsv461218	chr4:8254784-8320126	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
16	nsv593628	chr4:8254784-8320126	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
17	nsv593630	chr4:8271251-8280040	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
18	nsv593633	chr4:8271302-8280040	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8271000-8276400	Enhancers	Spleen	Spleen
2	chr4:8272400-8274800	Flanking Active TSS	Ovary	ovary
3	chr4:8272600-8278400	Weak transcription	A549	lung
4	chr4:8272600-8282200	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:8272800-8275200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr4:8272800-8275200	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr4:8272800-8283400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:8273000-8276200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:8273000-8276200	Weak transcription	HSMMtube	muscle
10	chr4:8273000-8276800	Weak transcription	Psoas Muscle	Psoas
11	chr4:8273400-8275000	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
12	chr4:8273400-8276400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:8273400-8284000	Enhancers	Fetal Muscle Leg	muscle
14	chr4:8273600-8274800	Enhancers	Esophagus	oesophagus
15	chr4:8273600-8275200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:8273600-8280000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:8273800-8274800	Enhancers	Rectal Smooth Muscle	rectum
18	chr4:8273800-8275200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr4:8273800-8276400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr4:8273800-8283800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:8273800-8287400	Enhancers	Fetal Heart	heart
22	chr4:8274000-8274800	Enhancers	Gastric	stomach
23	chr4:8274000-8274800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr4:8274000-8275000	Enhancers	Fetal Lung	lung
25	chr4:8274000-8275000	Enhancers	Left Ventricle	heart
26	chr4:8274000-8275200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:8274000-8277400	Enhancers	Fetal Intestine Small	intestine
28	chr4:8274200-8274800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:8274200-8275200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:8274200-8275200	Enhancers	HUVEC	blood vessel
31	chr4:8274200-8281800	Enhancers	Placenta	Placenta
32	chr4:8274400-8274800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr4:8274400-8274800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:8274400-8274800	Flanking Active TSS	Right Atrium	heart
35	chr4:8274400-8274800	Flanking Active TSS	Right Ventricle	heart
36	chr4:8274400-8274800	Enhancers	NHDF-Ad	bronchial
37	chr4:8274400-8274800	Bivalent Enhancer	NHLF	lung
38	chr4:8274400-8275000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:8274400-8275000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr4:8274400-8275000	Enhancers	Lung	lung
41	chr4:8274400-8275000	Enhancers	HSMM	muscle
42	chr4:8274400-8275000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr4:8274400-8275800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr4:8274600-8274800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr4:8274600-8274800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:8274600-8274800	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr4:8274600-8275000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr4:8274600-8275000	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr4:8274600-8275200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
50	chr4:8274600-8276000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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