The 2.0 version of rSNPBase

Variant report

Variant rs55959071
Chromosome Location chr12:11845322-11845323
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11815000-11850600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr12:11822000-11850000 Weak transcription HMEC breast
3 chr12:11822200-11851000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr12:11826000-11851200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr12:11827400-11879800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr12:11827800-11851800 Weak transcription Ovary ovary
7 chr12:11831000-11848600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr12:11831200-11847200 Weak transcription Brain Hippocampus Middle brain
9 chr12:11831400-11845600 Weak transcription Fetal Muscle Trunk muscle
10 chr12:11831600-11852600 Weak transcription Fetal Adrenal Gland Adrenal Gland
11 chr12:11832600-11848200 Weak transcription HSMMtube muscle
12 chr12:11835600-11847000 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr12:11837200-11858600 Weak transcription Fetal Intestine Large intestine
14 chr12:11838000-11850000 Weak transcription HUVEC blood vessel
15 chr12:11838000-11850400 Weak transcription Muscle Satellite Cultured Cells --
16 chr12:11838000-11858000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr12:11838200-11846600 Weak transcription Esophagus oesophagus
18 chr12:11838200-11848200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr12:11838400-11848000 Weak transcription Primary B cells from cord blood blood
20 chr12:11838400-11848000 Weak transcription Primary B cells from peripheral blood blood
21 chr12:11838400-11854200 Weak transcription Fetal Heart heart
22 chr12:11838600-11848000 Weak transcription NH-A brain
23 chr12:11838800-11872200 Weak transcription Primary T cells from cord blood blood
24 chr12:11839200-11857800 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr12:11839400-11853400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr12:11839400-11859000 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr12:11840000-11846200 Weak transcription Liver Liver
28 chr12:11840800-11846800 Strong transcription GM12878-XiMat blood
29 chr12:11840800-11854400 Weak transcription H1 Cell Line embryonic stem cell
30 chr12:11840800-11859200 Weak transcription Fetal Kidney kidney
31 chr12:11841200-11846600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr12:11841200-11854200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr12:11841200-11856800 Weak transcription Primary neutrophils fromperipheralblood blood
34 chr12:11841600-11846400 Weak transcription Spleen Spleen
35 chr12:11841600-11847800 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr12:11841600-11848200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr12:11841600-11853600 Strong transcription Primary hematopoietic stem cells short term culture blood
38 chr12:11841800-11845600 Weak transcription Pancreas Pancrea
39 chr12:11841800-11846000 Weak transcription Right Ventricle heart
40 chr12:11841800-11846200 Weak transcription Aorta Aorta
41 chr12:11841800-11846400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr12:11841800-11846400 Weak transcription Duodenum Mucosa Duodenum
43 chr12:11841800-11846400 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr12:11841800-11848200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr12:11841800-11848200 Weak transcription Gastric stomach
46 chr12:11841800-11853600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr12:11841800-11853800 Weak transcription Small Intestine intestine
48 chr12:11841800-11854200 Weak transcription Fetal Lung lung
49 chr12:11841800-11854200 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr12:11841800-11860200 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015