Variant report

Variant	rs55959166
Chromosome Location	chr1:93823817-93823818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93816828..93819255-chr1:93822966..93824578,2	MCF-7	breast:
2	chr1:93823683..93825200-chr1:94208287..94210283,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10157785	1.00[EUR][1000 genomes]
rs1054165	1.00[EUR][1000 genomes]
rs11799859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11801977	1.00[EUR][1000 genomes]
rs11802421	1.00[EUR][1000 genomes]
rs11805046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11807404	1.00[EUR][1000 genomes]
rs11808266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17109954	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110016	1.00[EUR][1000 genomes]
rs17131715	1.00[EUR][1000 genomes]
rs17131717	1.00[EUR][1000 genomes]
rs1932313	1.00[EUR][1000 genomes]
rs35555794	1.00[EUR][1000 genomes]
rs55940503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57353954	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58351576	1.00[EUR][1000 genomes]
rs58505360	1.00[EUR][1000 genomes]
rs59045869	1.00[EUR][1000 genomes]
rs60032869	1.00[EUR][1000 genomes]
rs60046384	1.00[EUR][1000 genomes]
rs60517691	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60868033	1.00[EUR][1000 genomes]
rs61215181	1.00[EUR][1000 genomes]
rs61671588	1.00[EUR][1000 genomes]
rs6541360	1.00[EUR][1000 genomes]
rs6541378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664053	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677862	1.00[EUR][1000 genomes]
rs6678465	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682265	1.00[EUR][1000 genomes]
rs6687167	1.00[EUR][1000 genomes]
rs6688513	1.00[EUR][1000 genomes]
rs6691556	1.00[EUR][1000 genomes]
rs6703963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955374	1.00[EUR][1000 genomes]
rs72955379	1.00[EUR][1000 genomes]
rs72957300	1.00[EUR][1000 genomes]
rs72961310	1.00[EUR][1000 genomes]
rs74101439	1.00[EUR][1000 genomes]
rs74101447	1.00[EUR][1000 genomes]
rs74101453	1.00[EUR][1000 genomes]
rs74101464	1.00[EUR][1000 genomes]
rs74101603	1.00[EUR][1000 genomes]
rs74104019	0.83[AMR][1000 genomes]
rs74104033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7518171	1.00[EUR][1000 genomes]
rs7525388	1.00[EUR][1000 genomes]
rs7530923	1.00[EUR][1000 genomes]
rs7545358	1.00[EUR][1000 genomes]
rs754899	1.00[EUR][1000 genomes]
rs9662414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93812800-93831000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:93812800-93832200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:93813400-93840000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:93813400-93840400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:93815400-93839800	Weak transcription	Aorta	Aorta
6	chr1:93815600-93834800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:93816000-93832200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:93816600-93841800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:93816800-93841200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:93817600-93824600	Strong transcription	Fetal Intestine Large	intestine
11	chr1:93817800-93832400	Weak transcription	Psoas Muscle	Psoas
12	chr1:93818000-93826400	Strong transcription	Placenta	Placenta
13	chr1:93818000-93835400	Weak transcription	Small Intestine	intestine
14	chr1:93818200-93826400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:93818200-93826600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:93818400-93824200	Weak transcription	Brain Substantia Nigra	brain
17	chr1:93818400-93824400	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr1:93818400-93825600	Strong transcription	Primary B cells from cord blood	blood
19	chr1:93818400-93826200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:93818400-93836000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:93818600-93824600	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr1:93818800-93827200	Strong transcription	Fetal Thymus	thymus
23	chr1:93818800-93837200	Weak transcription	Fetal Kidney	kidney
24	chr1:93819000-93828000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:93819000-93833200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:93819200-93824800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr1:93819200-93826400	Strong transcription	HUVEC	blood vessel
28	chr1:93819400-93826400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr1:93819400-93832000	Strong transcription	HSMM	muscle
30	chr1:93819400-93834600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr1:93819600-93824000	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr1:93819600-93824400	Strong transcription	Hela-S3	cervix
33	chr1:93819600-93824800	Strong transcription	Osteobl	bone
34	chr1:93819600-93826400	Strong transcription	NH-A	brain
35	chr1:93819600-93826600	Strong transcription	HepG2	liver
36	chr1:93819600-93830000	Strong transcription	HMEC	breast
37	chr1:93819800-93824000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:93819800-93824600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:93819800-93825000	Strong transcription	Duodenum Mucosa	Duodenum
40	chr1:93819800-93827000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr1:93819800-93827200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr1:93819800-93827600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:93819800-93829800	Strong transcription	NHDF-Ad	bronchial
44	chr1:93819800-93830800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:93820000-93824200	Strong transcription	NHLF	lung
46	chr1:93820000-93826600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:93820000-93827200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:93820200-93824200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr1:93820200-93824200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr1:93820200-93824400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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