Variant report

Variant	rs55962148
Chromosome Location	chr6:74962021-74962022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11752920	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11754468	0.92[EUR][1000 genomes]
rs11754988	1.00[AFR][1000 genomes]
rs11758445	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11759133	0.92[EUR][1000 genomes]
rs16884519	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16884624	0.94[EUR][1000 genomes]
rs16884690	0.92[EUR][1000 genomes]
rs1817735	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3898077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55768795	0.86[EUR][1000 genomes]
rs55784940	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56004196	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56020332	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56168817	0.92[EUR][1000 genomes]
rs56232317	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67076726	0.94[EUR][1000 genomes]
rs6926572	0.92[EUR][1000 genomes]
rs72950543	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72950546	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72953763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72954314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72957983	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72957986	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72957999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72959615	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72959617	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72959619	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72964214	0.85[AMR][1000 genomes]
rs72967265	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72967284	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72967286	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72967291	0.84[EUR][1000 genomes]
rs7755776	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7776273	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9359077	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74959600-74963400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:74960400-74965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:74961400-74963200	Weak transcription	NHEK	skin
4	chr6:74961400-74966400	Weak transcription	NHLF	lung
5	chr6:74961600-74962200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr6:74961600-74966600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:74961800-74966600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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