Variant report

Variant	rs55962316
Chromosome Location	chr4:86538580-86538581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1026871	1.00[AMR][1000 genomes]
rs10516752	1.00[AMR][1000 genomes]
rs12108201	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55914555	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062765	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58048238	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6811202	0.89[AFR][1000 genomes]
rs72979969	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982048	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832874	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833375	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833384	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835232	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86517800-86542200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:86525600-86559200	Weak transcription	HSMM	muscle
3	chr4:86528400-86553600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:86537400-86542200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:86537600-86549200	Weak transcription	Primary B cells from cord blood	blood
6	chr4:86538000-86547800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr4:86538400-86539400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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