Variant report

Variant	rs559632568
Chromosome Location	chr11:46025509-46025510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46019054..46021565-chr11:46025255..46027912,2	K562	blood:
2	chr11:46021583..46025208-chr11:46025456..46028440,3	K562	blood:
3	chr11:46024538..46028805-chr11:46032055..46036011,4	K562	blood:
4	chr11:45927204..45929356-chr11:46025400..46027265,2	K562	blood:

Variant related genes	Relation type
ENSG00000255498	Chromatin interaction
ENSG00000234776	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv522527	chr11:46024183-46033104	Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv972948	chr11:46025325-46031491	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:46012800-46031000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
6	chr11:46015600-46026400	Weak transcription	Stomach Mucosa	stomach
7	chr11:46016200-46048200	Weak transcription	Esophagus	oesophagus
8	chr11:46016800-46044000	Weak transcription	Primary T cells from cord blood	blood
9	chr11:46017000-46032000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:46020600-46026800	Enhancers	Fetal Brain Male	brain
11	chr11:46021600-46025600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:46022000-46026200	Weak transcription	K562	blood
13	chr11:46022000-46033600	Weak transcription	Primary B cells from cord blood	blood
14	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:46022600-46026000	Enhancers	Osteobl	bone
16	chr11:46022600-46026400	Enhancers	HSMM	muscle
17	chr11:46022600-46028200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:46022800-46026400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:46022800-46026600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:46023000-46026000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:46023000-46028000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr11:46023000-46029000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:46023200-46025600	Enhancers	HSMMtube	muscle
24	chr11:46023200-46026400	Enhancers	Fetal Brain Female	brain
25	chr11:46023400-46026400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr11:46023400-46027600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:46023400-46038200	Weak transcription	A549	lung
28	chr11:46023400-46041800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:46023400-46047800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:46023400-46048200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:46023600-46025800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:46023600-46027000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr11:46023600-46041600	Weak transcription	Ovary	ovary
34	chr11:46023600-46046400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:46024000-46026800	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr11:46024000-46028000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:46024400-46026600	Weak transcription	Fetal Stomach	stomach
38	chr11:46024600-46025600	Enhancers	Brain Germinal Matrix	brain
39	chr11:46024800-46025600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:46024800-46025600	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr11:46024800-46025600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:46024800-46026000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:46024800-46026400	Enhancers	Rectal Smooth Muscle	rectum
44	chr11:46024800-46042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:46025000-46025600	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr11:46025000-46025600	Enhancers	Adipose Nuclei	Adipose
47	chr11:46025000-46025600	Enhancers	Aorta	Aorta
48	chr11:46025000-46025800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:46025000-46025800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:46025000-46026200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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