Variant report

Variant	rs55970551
Chromosome Location	chr11:72150611-72150612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:72150592-72150787	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr11:72150565-72150857	MCF10A-Er-Src	breast:	n/a	chr11:72150689-72150700
3	FOS	chr11:72150583-72150841	HUVEC	blood vessel:	n/a	chr11:72150668-72150679
4	FOS	chr11:72150536-72150840	MCF10A-Er-Src	breast:	n/a	chr11:72150668-72150679
5	STAT3	chr11:72150534-72150871	MCF10A-Er-Src	breast:	n/a	chr11:72150689-72150700
6	STAT3	chr11:72150534-72150863	MCF10A-Er-Src	breast:	n/a	chr11:72150689-72150700
7	STAT3	chr11:72150512-72150870	MCF10A-Er-Src	breast:	n/a	chr11:72150689-72150700
8	FOS	chr11:72150488-72150850	MCF10A-Er-Src	breast:	n/a	chr11:72150668-72150679
9	E2F4	chr11:72150591-72150806	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr11:72150574-72150796	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr11:72150589-72150756	MCF10A-Er-Src	breast:	n/a	n/a
12	STAT3	chr11:72150517-72150872	MCF10A-Er-Src	breast:	n/a	chr11:72150689-72150700
13	FOS	chr11:72150487-72150842	MCF10A-Er-Src	breast:	n/a	chr11:72150668-72150679
14	FOS	chr11:72150523-72150868	MCF10A-Er-Src	breast:	n/a	chr11:72150668-72150679
15	MYC	chr11:72150568-72150806	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72150565..72152924-chr11:72165968..72167789,2	K562	blood:

Variant related genes	Relation type
CLPB	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17162091	0.84[ASN][1000 genomes]
rs17847219	0.84[ASN][1000 genomes]
rs2365379	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55888146	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55989089	0.85[ASN][1000 genomes]
rs57191897	0.81[ASN][1000 genomes]
rs57275811	0.96[ASN][1000 genomes]
rs59755180	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60127404	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60549044	0.85[ASN][1000 genomes]
rs7115684	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7122350	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714548	0.84[ASN][1000 genomes]
rs73532651	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532653	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73532655	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73532669	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941873	0.83[ASN][1000 genomes]
rs7947973	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv2762916	chr11:72147875-72160112	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72145600-72152000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:72145600-72152600	Weak transcription	Right Atrium	heart
3	chr11:72146000-72152000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:72146800-72151200	Weak transcription	Placenta	Placenta
5	chr11:72148200-72150800	Weak transcription	Primary B cells from cord blood	blood
6	chr11:72150200-72151000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:72150200-72151200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:72150200-72151600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:72150200-72151600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:72150200-72151600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:72150200-72151600	Enhancers	HMEC	breast
12	chr11:72150200-72151600	Enhancers	NHEK	skin
13	chr11:72150200-72152200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:72150200-72153000	Enhancers	Adipose Nuclei	Adipose
15	chr11:72150400-72150800	Enhancers	Hela-S3	cervix
16	chr11:72150400-72151400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:72150400-72151400	Enhancers	Osteobl	bone
18	chr11:72150400-72154800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:72150600-72151400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:72150600-72151600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:72150600-72152400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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