Variant report

Variant	rs55974693
Chromosome Location	chr7:48634295-48634296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 183 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs10499682	0.81[EUR][1000 genomes]
rs10499684	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185608	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185609	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112361	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12113920	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12113960	0.92[ASN][1000 genomes]
rs12669930	0.81[EUR][1000 genomes]
rs12669976	0.81[EUR][1000 genomes]
rs12670340	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12671073	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12672551	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12673070	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12674031	0.81[EUR][1000 genomes]
rs12674401	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12674424	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1316349	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1316821	0.81[EUR][1000 genomes]
rs1317162	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1405920	0.81[EUR][1000 genomes]
rs1527835	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1527839	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1527840	0.81[EUR][1000 genomes]
rs1609212	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1609213	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1609214	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17092931	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17132373	0.81[EUR][1000 genomes]
rs17132376	0.81[EUR][1000 genomes]
rs17132383	0.81[EUR][1000 genomes]
rs17132388	0.81[EUR][1000 genomes]
rs17132417	0.81[EUR][1000 genomes]
rs17132439	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17132443	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17132460	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17132479	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17132491	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918580	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918581	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918586	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918587	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918588	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918589	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918594	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918595	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1918596	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918597	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918598	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918600	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1918601	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918602	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918606	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1918608	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1918613	0.81[EUR][1000 genomes]
rs2141251	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2178086	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2178087	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2222731	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34252471	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4072501	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4072502	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4072503	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41332948	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4144061	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4144063	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4144064	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4144067	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4144068	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4295610	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4296993	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4398852	0.87[ASN][1000 genomes]
rs4587280	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55735040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55903755	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56134922	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56205257	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56213942	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56232183	0.81[EUR][1000 genomes]
rs56241442	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56393952	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56408667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56798342	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56806901	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57226042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57370511	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57401097	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57877708	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58054917	0.81[EUR][1000 genomes]
rs58077564	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58321909	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58433353	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58481134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58486673	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58635193	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59100514	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59243715	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59549039	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59673264	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60184691	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60813775	0.85[EUR][1000 genomes]
rs60918397	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61171557	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61310674	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61562434	0.81[EUR][1000 genomes]
rs61602397	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61649354	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61706229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583452	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583456	0.90[ASN][1000 genomes]
rs66481137	0.81[AFR][1000 genomes]
rs66522605	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66591834	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66729625	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66763020	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66785002	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66793444	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66909576	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67040412	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67074321	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67081192	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67163301	0.81[EUR][1000 genomes]
rs67187623	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67208890	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67249167	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67249859	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67294077	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67298249	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67316911	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67331245	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67370671	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67398358	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67744396	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67744565	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67748204	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67764854	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67845756	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67852079	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67875048	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67985903	0.81[EUR][1000 genomes]
rs68007434	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68029531	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68084496	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68110103	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68168969	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68179951	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6944801	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6954223	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6955102	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6957309	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6963717	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6966994	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968069	0.81[EUR][1000 genomes]
rs6970434	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6972202	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6972440	0.81[EUR][1000 genomes]
rs6977997	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6980042	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6980069	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73094625	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73109344	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73109355	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73109362	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73109364	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73109382	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73109385	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73109399	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73109401	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73111405	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7455877	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7457791	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7778895	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7781149	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7781150	0.81[EUR][1000 genomes]
rs7785069	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7804139	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7806480	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7807529	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7810275	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9690617	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9691143	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9691391	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48632600-48637000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:48633600-48634400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:48634000-48640200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:48634200-48635800	Strong transcription	Primary hematopoietic stem cells	blood

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