Variant report

Variant	rs55974735
Chromosome Location	chr7:145629000-145629001
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145623731..145626417-chr7:145628652..145631149,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10224933	0.96[ASN][1000 genomes]
rs10227797	0.92[ASN][1000 genomes]
rs10454319	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10952638	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11765533	1.00[ASN][1000 genomes]
rs11972088	1.00[ASN][1000 genomes]
rs11975168	1.00[ASN][1000 genomes]
rs11976392	0.82[ASN][1000 genomes]
rs12670944	0.99[ASN][1000 genomes]
rs12670972	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12672708	0.99[ASN][1000 genomes]
rs12703750	0.83[AFR][1000 genomes]
rs34005014	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34125020	1.00[ASN][1000 genomes]
rs34288280	0.99[ASN][1000 genomes]
rs34456214	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35586102	0.89[ASN][1000 genomes]
rs4436045	0.83[AFR][1000 genomes]
rs4726775	0.97[ASN][1000 genomes]
rs56009897	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58863010	1.00[ASN][1000 genomes]
rs62503367	1.00[ASN][1000 genomes]
rs6464708	1.00[ASN][1000 genomes]
rs67904872	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6943389	1.00[ASN][1000 genomes]
rs6957251	0.99[ASN][1000 genomes]
rs6976183	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6976666	0.99[ASN][1000 genomes]
rs7777268	1.00[ASN][1000 genomes]
rs7777578	0.87[ASN][1000 genomes]
rs7779212	0.87[ASN][1000 genomes]
rs7780753	0.99[ASN][1000 genomes]
rs7787529	0.98[ASN][1000 genomes]
rs7803306	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv889385	chr7:145617629-145803095	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145624200-145632400	Weak transcription	K562	blood
2	chr7:145629000-145629600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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