Variant report

Variant	rs55977335
Chromosome Location	chr10:4153923-4153924
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60489704	1.00[AFR][1000 genomes]
rs74114603	1.00[AFR][1000 genomes]
rs74114608	0.85[AFR][1000 genomes]
rs74114610	1.00[AFR][1000 genomes]
rs74114613	1.00[AFR][1000 genomes]
rs74114621	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4152400-4154400	Weak transcription	NHLF	lung
2	chr10:4153200-4154600	Enhancers	Osteobl	bone
3	chr10:4153400-4154400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:4153400-4154600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:4153400-4154800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:4153400-4154800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4153400-4154800	Weak transcription	Left Ventricle	heart
8	chr10:4153600-4154000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:4153800-4154200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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