Variant report

Variant	rs559854517
Chromosome Location	chr4:141798454-141798455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:141787778..141789643-chr4:141796789..141798752,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1845859	chr4:141786475-141816657	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv527493	chr4:141797537-141810103	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141789600-141831600	Weak transcription	Aorta	Aorta
2	chr4:141792000-141798800	Weak transcription	Right Ventricle	heart
3	chr4:141792000-141802800	Weak transcription	Gastric	stomach
4	chr4:141795200-141799000	Enhancers	Fetal Heart	heart
5	chr4:141795200-141799200	Enhancers	Fetal Lung	lung
6	chr4:141796400-141798600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:141796400-141799200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:141797000-141799200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:141797200-141798600	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:141797200-141798800	Enhancers	Colon Smooth Muscle	Colon
11	chr4:141797200-141799200	Enhancers	Osteobl	bone
12	chr4:141797600-141798600	Enhancers	Adipose Nuclei	Adipose
13	chr4:141797600-141798800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:141797600-141798800	Enhancers	NHDF-Ad	bronchial
15	chr4:141797800-141798800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:141797800-141799000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:141797800-141802600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:141798000-141798600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:141798000-141798600	Weak transcription	Fetal Brain Male	brain
20	chr4:141798000-141799000	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:141798000-141799000	Weak transcription	Ovary	ovary
22	chr4:141798000-141799200	Weak transcription	Right Atrium	heart
23	chr4:141798200-141807800	Weak transcription	Fetal Stomach	stomach
24	chr4:141798400-141798600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:141798400-141799000	Weak transcription	Fetal Brain Female	brain

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