The 2.0 version of rSNPBase

Variant report

Variant rs559857626
Chromosome Location chr6:55039216-55039217
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:55038800-55039800 Active TSS Fetal Brain Female brain
2 chr6:55039000-55039400 Bivalent/Poised TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
3 chr6:55039000-55039400 Bivalent/Poised TSS Ganglion Eminence derived primary cultured neurospheres brain
4 chr6:55039000-55039400 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr6:55039000-55039400 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
6 chr6:55039000-55039600 Bivalent Enhancer Primary hematopoietic stem cells blood
7 chr6:55039000-55039600 Flanking Bivalent TSS/Enh Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr6:55039000-55039600 Flanking Bivalent TSS/Enh Skeletal Muscle Male skeletal muscle
9 chr6:55039000-55039800 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr6:55039000-55039800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
11 chr6:55039000-55039800 Active TSS ES-UCSF4 Cell Line embryonic stem cell
12 chr6:55039000-55040000 Bivalent/Poised TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr6:55039000-55040000 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
14 chr6:55039000-55040200 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
15 chr6:55039000-55040200 Bivalent/Poised TSS iPS DF 6.9 Cell Line embryonic stem cell
16 chr6:55039000-55040200 Enhancers Pancreas Pancrea
17 chr6:55039000-55040200 Active TSS Right Atrium heart
18 chr6:55039000-55040200 Bivalent/Poised TSS Stomach Smooth Muscle stomach
19 chr6:55039000-55040400 Bivalent/Poised TSS ES-WA7 Cell Line embryonic stem cell
20 chr6:55039000-55040400 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
21 chr6:55039000-55040600 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
22 chr6:55039000-55040600 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
23 chr6:55039000-55040600 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
24 chr6:55039000-55040600 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr6:55039000-55040800 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
26 chr6:55039000-55040800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
27 chr6:55039200-55039400 Flanking Bivalent TSS/Enh H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr6:55039200-55039400 Flanking Bivalent TSS/Enh IMR90 fetal lung fibroblasts Cell Line lung
29 chr6:55039200-55039400 Flanking Bivalent TSS/Enh Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr6:55039200-55039400 Flanking Bivalent TSS/Enh Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr6:55039200-55039400 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr6:55039200-55039400 Flanking Bivalent TSS/Enh Muscle Satellite Cultured Cells --
33 chr6:55039200-55039400 Bivalent/Poised TSS Adipose Nuclei Adipose
34 chr6:55039200-55039400 Flanking Bivalent TSS/Enh Brain Hippocampus Middle brain
35 chr6:55039200-55039400 Flanking Bivalent TSS/Enh Brain Dorsolateral Prefrontal Cortex brain
36 chr6:55039200-55039400 Bivalent Enhancer Esophagus oesophagus
37 chr6:55039200-55039400 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
38 chr6:55039200-55039400 Bivalent Enhancer Fetal Brain Male brain
39 chr6:55039200-55039400 Bivalent Enhancer Fetal Muscle Trunk muscle
40 chr6:55039200-55039400 Bivalent Enhancer Fetal Muscle Leg muscle
41 chr6:55039200-55039400 Bivalent Enhancer Placenta Placenta
42 chr6:55039200-55039400 Bivalent Enhancer Left Ventricle heart
43 chr6:55039200-55039400 Bivalent Enhancer Rectal Mucosa Donor 29 rectum
44 chr6:55039200-55039400 Active TSS Rectal Smooth Muscle rectum
45 chr6:55039200-55039400 Bivalent Enhancer HMEC breast
46 chr6:55039200-55039600 Flanking Bivalent TSS/Enh H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr6:55039200-55039600 Flanking Bivalent TSS/Enh H9 Derived Neuron Cultured Cells ES cell derived
48 chr6:55039200-55039600 Active TSS Breast Myoepithelial Primary Cells Breast
49 chr6:55039200-55039600 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr6:55039200-55039600 Bivalent/Poised TSS Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015