The 2.0 version of rSNPBase

Variant report

Variant rs55986560
Chromosome Location chr19:41939835-41939836
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41934000-41944800 Weak transcription Hela-S3 cervix
2 chr19:41934400-41945000 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr19:41934600-41944200 Weak transcription Fetal Brain Male brain
4 chr19:41934800-41945400 Weak transcription Small Intestine intestine
5 chr19:41935000-41940000 Strong transcription Fetal Stomach stomach
6 chr19:41935000-41945000 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr19:41936200-41940000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr19:41936600-41940600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr19:41936600-41944200 Strong transcription A549 lung
10 chr19:41936800-41940000 Strong transcription Primary T helper cells fromperipheralblood blood
11 chr19:41936800-41940400 Strong transcription HUES48 Cell Line embryonic stem cell
12 chr19:41936800-41940600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr19:41936800-41944200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr19:41936800-41944200 Strong transcription Breast Myoepithelial Primary Cells Breast
15 chr19:41936800-41944200 Strong transcription Primary T cells from cord blood blood
16 chr19:41937000-41940000 Strong transcription Primary T regulatory cells fromperipheralblood blood
17 chr19:41937000-41944200 Strong transcription Primary T helper naive cells fromperipheralblood blood
18 chr19:41937200-41944200 Strong transcription HUES64 Cell Line embryonic stem cell
19 chr19:41938400-41943800 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr19:41938600-41940000 Strong transcription Fetal Adrenal Gland Adrenal Gland
21 chr19:41938600-41940200 Strong transcription K562 blood
22 chr19:41938600-41945000 Weak transcription HSMMtube muscle
23 chr19:41938800-41944800 Weak transcription iPS-15b Cell Line embryonic stem cell
24 chr19:41938800-41945000 Weak transcription Fetal Kidney kidney
25 chr19:41938800-41945000 Weak transcription NHDF-Ad bronchial
26 chr19:41938800-41945200 Weak transcription Right Atrium heart
27 chr19:41939000-41940400 Strong transcription Fetal Intestine Small intestine
28 chr19:41939000-41942200 Weak transcription HepG2 liver
29 chr19:41939000-41942200 Weak transcription Osteobl bone
30 chr19:41939000-41944800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr19:41939000-41944800 Weak transcription NH-A brain
32 chr19:41939000-41945000 Weak transcription Primary B cells from cord blood blood
33 chr19:41939200-41942200 Weak transcription Brain Cingulate Gyrus brain
34 chr19:41939200-41942200 Weak transcription Brain Substantia Nigra brain
35 chr19:41939200-41942200 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr19:41939200-41944600 Weak transcription Muscle Satellite Cultured Cells --
37 chr19:41939200-41944600 Weak transcription GM12878-XiMat blood
38 chr19:41939200-41944800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr19:41939200-41944800 Weak transcription Fetal Lung lung
40 chr19:41939200-41944800 Weak transcription HSMM muscle
41 chr19:41939200-41945000 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr19:41939200-41945000 Weak transcription Brain Inferior Temporal Lobe brain
43 chr19:41939400-41940000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr19:41939400-41940400 Weak transcription Primary hematopoietic stem cells blood
45 chr19:41939400-41942000 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr19:41939400-41942200 Weak transcription Aorta Aorta
47 chr19:41939400-41942200 Weak transcription Brain Anterior Caudate brain
48 chr19:41939400-41942200 Weak transcription Rectal Smooth Muscle rectum
49 chr19:41939400-41942400 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr19:41939400-41942600 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015