Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10496047	0.81[EUR][1000 genomes]
rs12471135	0.88[EUR][1000 genomes]
rs12472098	0.88[EUR][1000 genomes]
rs1454426	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17792798	0.89[EUR][1000 genomes]
rs17792822	0.89[EUR][1000 genomes]
rs41281507	0.89[EUR][1000 genomes]
rs4671247	0.89[EUR][1000 genomes]
rs4672053	0.89[EUR][1000 genomes]
rs4672057	0.82[EUR][1000 genomes]
rs55850643	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56227318	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56286204	0.82[EUR][1000 genomes]
rs56299972	0.81[EUR][1000 genomes]
rs56409619	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56769899	0.84[EUR][1000 genomes]
rs60312537	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741902	0.81[EUR][1000 genomes]
rs6752098	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801524	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7600034	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006170	chr2:55530179-55809251	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv520581	chr2:55622825-55903016	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv961778	chr2:55659501-55668562	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55668400-55668600	Enhancers	A549	lung
2	chr2:55668400-55669400	Enhancers	K562	blood

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