Variant report

Variant	rs55988102
Chromosome Location	chr14:70190331-70190332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70186235..70188354-chr14:70189451..70192309,2	MCF-7	breast:
2	chr14:70181314..70183326-chr14:70188869..70190637,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56002959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56051240	1.00[AMR][1000 genomes]
rs56808476	1.00[AMR][1000 genomes]
rs56859443	1.00[AMR][1000 genomes]
rs56956469	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57194889	1.00[AMR][1000 genomes]
rs58140746	1.00[AMR][1000 genomes]
rs58583730	1.00[AMR][1000 genomes]
rs59555734	1.00[AMR][1000 genomes]
rs60085780	1.00[AMR][1000 genomes]
rs60493601	1.00[AMR][1000 genomes]
rs60835679	1.00[AMR][1000 genomes]
rs74060204	1.00[AMR][1000 genomes]
rs74060205	1.00[AMR][1000 genomes]
rs74060219	1.00[AMR][1000 genomes]
rs74060234	1.00[AMR][1000 genomes]
rs74060237	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060267	1.00[AMR][1000 genomes]
rs74060270	1.00[AMR][1000 genomes]
rs74060294	1.00[AMR][1000 genomes]
rs74061848	1.00[AMR][1000 genomes]
rs74061849	1.00[AMR][1000 genomes]
rs74061850	1.00[AMR][1000 genomes]
rs74061851	1.00[AMR][1000 genomes]
rs74061853	1.00[AMR][1000 genomes]
rs74061856	1.00[AMR][1000 genomes]
rs74061857	1.00[AMR][1000 genomes]
rs74061864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70180400-70193400	Weak transcription	Pancreas	Pancrea
2	chr14:70181400-70193600	Weak transcription	Primary T cells from cord blood	blood
3	chr14:70181600-70193400	Weak transcription	Thymus	Thymus
4	chr14:70182000-70193200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr14:70183000-70193400	Weak transcription	Fetal Intestine Small	intestine
6	chr14:70183800-70193400	Weak transcription	Colonic Mucosa	Colon
7	chr14:70183800-70193400	Weak transcription	Small Intestine	intestine
8	chr14:70184000-70192800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:70184000-70193000	Weak transcription	Brain Substantia Nigra	brain
10	chr14:70186400-70191800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:70186600-70193400	Weak transcription	Ovary	ovary
12	chr14:70186800-70192400	Weak transcription	Spleen	Spleen
13	chr14:70186800-70192800	Weak transcription	Left Ventricle	heart
14	chr14:70186800-70193000	Weak transcription	GM12878-XiMat	blood
15	chr14:70186800-70193400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:70186800-70193400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:70186800-70193400	Weak transcription	Psoas Muscle	Psoas
18	chr14:70186800-70193400	Weak transcription	HSMM	muscle
19	chr14:70187000-70191600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr14:70187000-70191600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr14:70187000-70192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:70187000-70193400	Weak transcription	HSMMtube	muscle
23	chr14:70187200-70192400	Weak transcription	Adipose Nuclei	Adipose
24	chr14:70187200-70192400	Weak transcription	HepG2	liver
25	chr14:70187200-70193400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:70187200-70193400	Weak transcription	HUVEC	blood vessel
27	chr14:70187400-70193400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:70187600-70193400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:70187600-70193400	Weak transcription	HMEC	breast
30	chr14:70187800-70192000	Weak transcription	Brain Hippocampus Middle	brain
31	chr14:70188000-70192400	Weak transcription	Fetal Muscle Leg	muscle
32	chr14:70188000-70193200	Weak transcription	Lung	lung
33	chr14:70188000-70193400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:70188000-70193400	Weak transcription	Right Atrium	heart
35	chr14:70188000-70193400	Weak transcription	Right Ventricle	heart
36	chr14:70188400-70193200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:70190000-70193400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:70190200-70190400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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