Variant report

Variant	rs55988920
Chromosome Location	chr11:70866568-70866569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10897725	0.96[EUR][1000 genomes]
rs10897726	0.96[EUR][1000 genomes]
rs11232300	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11232301	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11232305	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12271307	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12272223	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273863	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282822	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12289383	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295667	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28811899	0.84[EUR][1000 genomes]
rs28876818	0.84[EUR][1000 genomes]
rs34402475	0.88[EUR][1000 genomes]
rs35136877	0.82[EUR][1000 genomes]
rs4245462	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4304805	0.96[EUR][1000 genomes]
rs4334036	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4348928	0.84[EUR][1000 genomes]
rs4424695	0.86[EUR][1000 genomes]
rs4944245	0.96[EUR][1000 genomes]
rs55664123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56144630	0.85[EUR][1000 genomes]
rs56181437	0.88[EUR][1000 genomes]
rs56291131	0.87[EUR][1000 genomes]
rs56393668	0.86[EUR][1000 genomes]
rs59052115	0.86[EUR][1000 genomes]
rs60079515	0.86[EUR][1000 genomes]
rs61582992	0.87[EUR][1000 genomes]
rs7107858	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7116150	0.84[EUR][1000 genomes]
rs7123898	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7125114	0.88[EUR][1000 genomes]
rs72957115	0.84[EUR][1000 genomes]
rs72959509	0.84[EUR][1000 genomes]
rs72959517	0.88[EUR][1000 genomes]
rs72959521	0.88[EUR][1000 genomes]
rs72959524	0.87[EUR][1000 genomes]
rs7931474	0.82[EUR][1000 genomes]
rs7932968	0.95[EUR][1000 genomes]
rs7933736	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7933912	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7945968	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7949824	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7950101	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9888167	0.86[EUR][1000 genomes]
rs9888173	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9888203	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9888294	0.82[EUR][1000 genomes]
rs9888299	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70858200-70891000	Weak transcription	Gastric	stomach
2	chr11:70864600-70866800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:70864600-70866800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:70864600-70867400	Weak transcription	HSMMtube	muscle
5	chr11:70864600-70874800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:70864600-70886000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:70865000-70869800	Weak transcription	Fetal Kidney	kidney
8	chr11:70865400-70866800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:70865400-70880000	Weak transcription	A549	lung
10	chr11:70865600-70876400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:70865600-70876800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:70865600-70882400	Weak transcription	Placenta	Placenta
13	chr11:70865600-70885800	Weak transcription	Pancreas	Pancrea
14	chr11:70865800-70866800	Weak transcription	HepG2	liver
15	chr11:70865800-70867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:70865800-70870000	Weak transcription	Liver	Liver
17	chr11:70865800-70876400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:70866400-70881800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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