Variant report

Variant	rs55989089
Chromosome Location	chr11:72079482-72079483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72079257..72081887-chr11:72082769..72085446,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17162091	0.85[ASN][1000 genomes]
rs17847219	0.85[ASN][1000 genomes]
rs2365379	1.00[ASN][1000 genomes]
rs55888146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55907154	0.90[ASN][1000 genomes]
rs55970551	0.85[ASN][1000 genomes]
rs57191897	0.96[ASN][1000 genomes]
rs57275811	0.81[ASN][1000 genomes]
rs59755180	1.00[ASN][1000 genomes]
rs60549044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122350	0.85[ASN][1000 genomes]
rs714548	0.85[ASN][1000 genomes]
rs73532651	0.85[ASN][1000 genomes]
rs7941873	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72045800-72094600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:72050000-72092200	Weak transcription	Pancreas	Pancrea
3	chr11:72059800-72086800	Weak transcription	Fetal Brain Male	brain
4	chr11:72061400-72088600	Weak transcription	Ovary	ovary
5	chr11:72061400-72089800	Weak transcription	Brain Anterior Caudate	brain
6	chr11:72061400-72090000	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:72061400-72092200	Weak transcription	Gastric	stomach
8	chr11:72062600-72089600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:72064000-72090000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:72064400-72080000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:72064400-72090000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:72064800-72088800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:72064800-72089800	Weak transcription	HSMMtube	muscle
14	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
15	chr11:72066200-72091200	Weak transcription	Aorta	Aorta
16	chr11:72066600-72095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:72067000-72092000	Weak transcription	HepG2	liver
18	chr11:72067400-72090800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:72067800-72089600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:72067800-72090000	Weak transcription	Right Ventricle	heart
21	chr11:72068200-72084000	Weak transcription	Lung	lung
22	chr11:72069000-72090000	Weak transcription	NHEK	skin
23	chr11:72069400-72089600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:72069600-72090000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:72069600-72090200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:72069600-72090200	Weak transcription	Placenta	Placenta
28	chr11:72069600-72094600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:72069800-72084000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:72069800-72089200	Weak transcription	Spleen	Spleen
31	chr11:72069800-72089400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:72069800-72098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:72070200-72084000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:72070200-72089800	Weak transcription	Brain Substantia Nigra	brain
35	chr11:72070400-72089800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:72070600-72094000	Weak transcription	Fetal Thymus	thymus
37	chr11:72072800-72092400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:72072800-72098800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:72073400-72103200	Weak transcription	K562	blood
40	chr11:72074800-72079800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:72074800-72079800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:72075000-72089800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:72075000-72091000	Weak transcription	Thymus	Thymus
44	chr11:72075000-72099400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:72076800-72088800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:72077000-72090000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr11:72077200-72090000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:72077600-72083000	Weak transcription	Fetal Lung	lung
49	chr11:72077600-72089200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:72077600-72089800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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