The 2.0 version of rSNPBase

Variant report

Variant rs55999220
Chromosome Location chr2:181858611-181858612
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:181846400-181859200 Weak transcription Esophagus oesophagus
2 chr2:181846400-181868600 Weak transcription Gastric stomach
3 chr2:181846600-181872400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr2:181847000-181858800 Weak transcription Colonic Mucosa Colon
5 chr2:181847000-181859200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr2:181847000-181862400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr2:181847000-181862800 Weak transcription Placenta Placenta
8 chr2:181847000-181870000 Weak transcription Pancreas Pancrea
9 chr2:181847000-181873200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr2:181847200-181858800 Weak transcription Primary neutrophils fromperipheralblood blood
11 chr2:181847400-181870000 Weak transcription Right Ventricle heart
12 chr2:181847600-181864200 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr2:181847600-181868400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr2:181849000-181862000 Weak transcription Primary B cells from peripheral blood blood
15 chr2:181849000-181872800 Weak transcription Fetal Intestine Large intestine
16 chr2:181849200-181860000 Weak transcription Fetal Intestine Small intestine
17 chr2:181849400-181880000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr2:181850000-181873000 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr2:181850800-181869800 Weak transcription Primary T helper cells fromperipheralblood blood
20 chr2:181851000-181859600 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr2:181851000-181859800 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr2:181851000-181861200 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr2:181851000-181866000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr2:181851000-181866200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr2:181851000-181866400 Weak transcription Small Intestine intestine
26 chr2:181851000-181870000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr2:181851000-181872200 Weak transcription Left Ventricle heart
28 chr2:181851200-181859600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr2:181851200-181864000 Weak transcription Brain Anterior Caudate brain
30 chr2:181851200-181865600 Weak transcription Fetal Brain Male brain
31 chr2:181851200-181866600 Weak transcription Duodenum Mucosa Duodenum
32 chr2:181851200-181876200 Weak transcription Brain Inferior Temporal Lobe brain
33 chr2:181853000-181860600 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr2:181853000-181865600 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr2:181853000-181865800 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr2:181853000-181869800 Weak transcription Brain Angular Gyrus brain
37 chr2:181853000-181869800 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr2:181853200-181859000 Weak transcription iPS-15b Cell Line embryonic stem cell
39 chr2:181854000-181863000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr2:181854200-181859200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr2:181854400-181862000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr2:181854600-181872800 Weak transcription NHLF lung
43 chr2:181854800-181859200 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr2:181854800-181859400 Strong transcription Fetal Thymus thymus
45 chr2:181855200-181860800 Weak transcription NHEK skin
46 chr2:181855200-181871000 Weak transcription HUVEC blood vessel
47 chr2:181855400-181859200 Strong transcription HMEC breast
48 chr2:181855400-181863800 Weak transcription K562 blood
49 chr2:181855600-181860000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr2:181855600-181872400 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015