Variant report

Variant	rs56004196
Chromosome Location	chr6:74880673-74880674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10485388	0.85[ASN][1000 genomes]
rs11751061	0.85[ASN][1000 genomes]
rs11751771	0.87[ASN][1000 genomes]
rs11752920	0.85[AMR][1000 genomes]
rs11754164	0.87[ASN][1000 genomes]
rs11754468	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11758445	0.85[AMR][1000 genomes]
rs11759133	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12191462	0.85[ASN][1000 genomes]
rs12193999	0.87[ASN][1000 genomes]
rs12198091	0.85[ASN][1000 genomes]
rs12202674	0.87[ASN][1000 genomes]
rs12209571	0.83[ASN][1000 genomes]
rs16884519	0.80[EUR][1000 genomes]
rs1817735	0.85[AMR][1000 genomes]
rs3898077	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3923228	0.85[ASN][1000 genomes]
rs4537105	0.85[ASN][1000 genomes]
rs4546447	0.85[ASN][1000 genomes]
rs55755114	0.92[AMR][1000 genomes]
rs55768795	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55784940	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55962148	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56020332	0.85[AMR][1000 genomes]
rs56138029	0.85[ASN][1000 genomes]
rs56232317	0.84[EUR][1000 genomes]
rs56362119	0.85[ASN][1000 genomes]
rs72950543	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950546	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952344	0.92[AMR][1000 genomes]
rs72952371	0.85[ASN][1000 genomes]
rs72952395	0.85[ASN][1000 genomes]
rs72952398	0.85[ASN][1000 genomes]
rs72953763	0.85[AMR][1000 genomes]
rs72954314	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72957983	0.80[EUR][1000 genomes]
rs72957986	0.80[EUR][1000 genomes]
rs72957999	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72959615	0.85[AMR][1000 genomes]
rs72959617	0.85[AMR][1000 genomes]
rs72959619	0.85[AMR][1000 genomes]
rs72962230	0.87[ASN][1000 genomes]
rs72964214	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72967265	0.85[AMR][1000 genomes]
rs72967284	0.85[AMR][1000 genomes]
rs72967286	0.85[AMR][1000 genomes]
rs7755776	0.80[EUR][1000 genomes]
rs7776273	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74879400-74880800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:74879400-74880800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:74879400-74880800	Enhancers	HMEC	breast
4	chr6:74880200-74880800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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