Variant report

Variant	rs56011306
Chromosome Location	chr8:10879901-10879902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10111751	0.87[ASN][1000 genomes]
rs11250110	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250111	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11784312	1.00[ASN][1000 genomes]
rs11785788	0.87[ASN][1000 genomes]
rs12216784	0.89[ASN][1000 genomes]
rs17779093	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35083028	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234078	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3923921	0.87[ASN][1000 genomes]
rs4074356	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076424	0.98[EUR][1000 genomes]
rs4076425	1.00[ASN][1000 genomes]
rs4370496	1.00[ASN][1000 genomes]
rs4386942	1.00[ASN][1000 genomes]
rs4840531	0.87[ASN][1000 genomes]
rs4841473	0.87[ASN][1000 genomes]
rs4841476	1.00[ASN][1000 genomes]
rs56112120	0.87[ASN][1000 genomes]
rs57462408	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59446076	0.87[ASN][1000 genomes]
rs61427182	1.00[ASN][1000 genomes]
rs67113145	1.00[ASN][1000 genomes]
rs6990395	1.00[ASN][1000 genomes]
rs6994928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7001599	0.89[ASN][1000 genomes]
rs7010099	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7016361	0.89[ASN][1000 genomes]
rs73196884	1.00[ASN][1000 genomes]
rs73196885	1.00[ASN][1000 genomes]
rs73196888	1.00[ASN][1000 genomes]
rs73196893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73196895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7350066	0.87[ASN][1000 genomes]
rs7350072	0.87[ASN][1000 genomes]
rs7350074	1.00[ASN][1000 genomes]
rs7813323	0.87[ASN][1000 genomes]
rs7820231	0.87[ASN][1000 genomes]
rs7822400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842214	0.87[ASN][1000 genomes]
rs7845088	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10874400-10880200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:10874400-10892800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:10874600-10880000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:10875000-10890000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:10875200-10880400	Weak transcription	Pancreas	Pancrea
6	chr8:10877800-10880400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:10878400-10880000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:10878600-10880000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:10878600-10880200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:10878800-10880000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:10879000-10880200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:10879200-10880000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:10879200-10880000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:10879400-10880000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:10879400-10880000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr8:10879400-10880200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:10879600-10890000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:10879600-10890400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr8:10879800-10880000	Bivalent Enhancer	Placenta	Placenta
20	chr8:10879800-10890600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links