Variant report

Variant	rs56012740
Chromosome Location	chr14:65449017-65449018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65437470..65440876-chr14:65446847..65451096,5	MCF-7	breast:
2	chr14:65439920..65442131-chr14:65446641..65449260,2	MCF-7	breast:
3	chr14:65426410..65429284-chr14:65447447..65450019,2	MCF-7	breast:
4	chr14:65381014..65382741-chr14:65448776..65450867,2	MCF-7	breast:
5	chr14:65443562..65445334-chr14:65448735..65450470,2	MCF-7	breast:
6	chr14:65447542..65451008-chr14:65452135..65454598,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000257365	Chromatin interaction
ENSG00000258289	Chromatin interaction
ENSG00000139998	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11628676	1.00[ASN][1000 genomes]
rs55723212	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836818	1.00[ASN][1000 genomes]
rs56328485	1.00[ASN][1000 genomes]
rs56354838	1.00[ASN][1000 genomes]
rs56381821	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57581750	1.00[ASN][1000 genomes]
rs59414553	1.00[ASN][1000 genomes]
rs61596817	1.00[ASN][1000 genomes]
rs7159356	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72728221	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728225	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728226	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728227	1.00[ASN][1000 genomes]
rs72728229	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72728238	1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65439600-65453600	Weak transcription	Aorta	Aorta
2	chr14:65439800-65450200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:65439800-65450200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:65444000-65450200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:65446600-65450200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:65446600-65450200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:65446600-65450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:65446600-65450200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:65446600-65450200	Weak transcription	HSMM	muscle
10	chr14:65446600-65453400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:65446600-65453600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:65446800-65450200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:65446800-65450200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr14:65446800-65450200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:65446800-65450200	Weak transcription	Fetal Intestine Small	intestine
16	chr14:65446800-65450200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:65446800-65450200	Weak transcription	HSMMtube	muscle
18	chr14:65446800-65453000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:65446800-65453000	Weak transcription	Fetal Intestine Large	intestine
20	chr14:65446800-65453200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr14:65446800-65453200	Weak transcription	Placenta	Placenta
22	chr14:65447000-65449200	Weak transcription	A549	lung
23	chr14:65447000-65450200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:65448400-65450200	Enhancers	HepG2	liver

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