Variant report

Variant	rs56017967
Chromosome Location	chr1:210386523-210386524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210385619..210388421-chr1:210545718..210548491,2	MCF-7	breast:
2	chr1:210386045..210390022-chr1:210405136..210408091,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203706	Chromatin interaction
ENSG00000082497	Chromatin interaction
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10489389	1.00[EUR][1000 genomes]
rs12088457	1.00[EUR][1000 genomes]
rs12088691	1.00[EUR][1000 genomes]
rs1342134	1.00[EUR][1000 genomes]
rs17015995	1.00[EUR][1000 genomes]
rs17015999	1.00[EUR][1000 genomes]
rs17016011	1.00[EUR][1000 genomes]
rs17276856	1.00[EUR][1000 genomes]
rs55684632	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55934820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57296511	1.00[EUR][1000 genomes]
rs57841462	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61384712	1.00[EUR][1000 genomes]
rs73061730	1.00[EUR][1000 genomes]
rs73061735	1.00[EUR][1000 genomes]
rs73061738	1.00[EUR][1000 genomes]
rs73071940	1.00[EUR][1000 genomes]
rs73071956	1.00[EUR][1000 genomes]
rs73071958	1.00[EUR][1000 genomes]
rs73071959	1.00[EUR][1000 genomes]
rs73071965	1.00[EUR][1000 genomes]
rs73071973	1.00[EUR][1000 genomes]
rs73074132	1.00[EUR][1000 genomes]
rs74156110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74156112	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74156113	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74156114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74156116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74156118	1.00[EUR][1000 genomes]
rs74156120	1.00[AMR][1000 genomes]
rs74156121	1.00[EUR][1000 genomes]
rs74156122	1.00[EUR][1000 genomes]
rs74156123	1.00[EUR][1000 genomes]
rs74156149	1.00[EUR][1000 genomes]
rs9970953	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv526050	chr1:210381257-210386585	Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210386200-210387400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:210386400-210386800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:210386400-210387000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr1:210386400-210387000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:210386400-210387000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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