Variant report

Variant	rs56020332
Chromosome Location	chr6:75030022-75030023
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75012871..75015540-chr6:75027590..75030064,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11752920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11754468	0.86[EUR][1000 genomes]
rs11758445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11759133	0.86[EUR][1000 genomes]
rs16884519	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16884624	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16884690	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16884715	1.00[AFR][1000 genomes]
rs16884731	1.00[AFR][1000 genomes]
rs16884733	1.00[AFR][1000 genomes]
rs16884746	1.00[AFR][1000 genomes]
rs16884854	1.00[AFR][1000 genomes]
rs1817735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3846756	1.00[AFR][1000 genomes]
rs3898077	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4385272	1.00[AFR][1000 genomes]
rs4441922	1.00[AFR][1000 genomes]
rs55768795	0.81[EUR][1000 genomes]
rs55784940	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55962148	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56004196	0.85[AMR][1000 genomes]
rs56168817	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs56206543	1.00[AFR][1000 genomes]
rs56232317	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67076726	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6926572	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72950543	1.00[AMR][1000 genomes]
rs72950546	1.00[AMR][1000 genomes]
rs72953763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954314	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72957983	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72957986	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72957999	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72959615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72959617	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72959619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72964214	0.85[AMR][1000 genomes]
rs72967265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72967284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72967286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72967291	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72969227	1.00[AFR][1000 genomes]
rs72969239	1.00[AFR][1000 genomes]
rs72969247	1.00[AFR][1000 genomes]
rs72969251	1.00[AFR][1000 genomes]
rs7755776	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7776273	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9359077	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv7921	chr6:75029817-75031869	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75028600-75030600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:75028600-75030800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:75028600-75031200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:75029200-75030600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:75029200-75030800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:75029400-75030200	Enhancers	Colon Smooth Muscle	Colon
7	chr6:75029400-75030600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:75030000-75030400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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