Variant report

Variant	rs56023260
Chromosome Location	chr2:210446644-210446645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10198751	0.87[ASN][1000 genomes]
rs10204207	0.81[ASN][1000 genomes]
rs10207186	0.83[ASN][1000 genomes]
rs12613572	0.82[EUR][1000 genomes]
rs12615372	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12616589	0.84[EUR][1000 genomes]
rs12620654	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12621444	0.82[EUR][1000 genomes]
rs12622979	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12992342	0.86[ASN][1000 genomes]
rs13419929	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1396779	0.95[ASN][1000 genomes]
rs1509465	0.83[ASN][1000 genomes]
rs16843329	0.84[EUR][1000 genomes]
rs169636	0.87[ASN][1000 genomes]
rs2048250	0.95[ASN][1000 genomes]
rs2366112	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2663648	0.87[ASN][1000 genomes]
rs2663659	0.85[ASN][1000 genomes]
rs2710474	0.87[ASN][1000 genomes]
rs2710475	0.86[ASN][1000 genomes]
rs2710486	0.86[ASN][1000 genomes]
rs288079	0.86[ASN][1000 genomes]
rs288081	0.86[ASN][1000 genomes]
rs288084	0.86[ASN][1000 genomes]
rs288087	0.84[ASN][1000 genomes]
rs288088	0.84[ASN][1000 genomes]
rs34455059	0.85[ASN][1000 genomes]
rs34850994	0.86[ASN][1000 genomes]
rs35409969	0.85[ASN][1000 genomes]
rs55911510	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56164239	0.84[ASN][1000 genomes]
rs56677957	0.87[ASN][1000 genomes]
rs56775639	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56853570	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57383822	0.82[EUR][1000 genomes]
rs57781584	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58636345	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59032380	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60138527	0.84[EUR][1000 genomes]
rs60359169	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60497472	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6726061	0.95[ASN][1000 genomes]
rs6733319	0.86[ASN][1000 genomes]
rs6752348	0.82[EUR][1000 genomes]
rs73071034	0.81[EUR][1000 genomes]
rs73071071	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73071085	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7568260	0.82[EUR][1000 genomes]
rs7593381	0.81[EUR][1000 genomes]
rs906831	0.87[ASN][1000 genomes]
rs9288410	0.87[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210443600-210448200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:210443600-210461000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:210443800-210447200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:210443800-210447800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr2:210444200-210447400	Active TSS	Fetal Brain Male	brain
6	chr2:210444400-210449200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:210444800-210456800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:210445400-210449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr2:210446000-210446800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210446200-210446800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr2:210446200-210456800	Weak transcription	Brain Anterior Caudate	brain
12	chr2:210446400-210447200	Flanking Active TSS	Fetal Brain Female	brain
13	chr2:210446400-210447600	Active TSS	Brain Germinal Matrix	brain
14	chr2:210446400-210447800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:210446600-210447000	Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr2:210446600-210448000	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:210446600-210448800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:210446600-210461600	Weak transcription	Brain Angular Gyrus	brain

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