Variant report

Variant	rs560238
Chromosome Location	chr11:59841279-59841280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1151065	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1151103	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1151104	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1286162	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1286169	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1286171	0.86[ASN][1000 genomes]
rs1296390	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3016834	0.88[ASN][1000 genomes]
rs3016835	0.86[ASN][1000 genomes]
rs3016836	0.86[ASN][1000 genomes]
rs471457	0.92[ASN][1000 genomes]
rs474951	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs501697	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs501945	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs525828	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs528823	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs536531	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs539360	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs549651	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs549680	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs554311	0.81[EUR][1000 genomes]
rs558678	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs558788	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs579721	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7121429	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59832600-59844800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:59838000-59844600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:59838600-59844000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr11:59839600-59845400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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