Variant report

Variant	rs560308661
Chromosome Location	chr11:93406404-93406405
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
4	nsv525639	chr11:93406063-93411153	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395400-93406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:93395400-93406800	Weak transcription	Lung	lung
3	chr11:93395400-93412200	Weak transcription	Gastric	stomach
4	chr11:93395400-93412200	Weak transcription	Pancreas	Pancrea
5	chr11:93395400-93417800	Weak transcription	Small Intestine	intestine
6	chr11:93395600-93408200	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:93395600-93411800	Weak transcription	Aorta	Aorta
8	chr11:93395600-93412200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:93395600-93412400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:93395600-93412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:93395600-93412600	Weak transcription	Colonic Mucosa	Colon
12	chr11:93395600-93417400	Weak transcription	Stomach Mucosa	stomach
13	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:93395800-93411800	Weak transcription	HSMMtube	muscle
15	chr11:93395800-93412200	Weak transcription	Thymus	Thymus
16	chr11:93395800-93413200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:93395800-93413400	Weak transcription	Right Ventricle	heart
18	chr11:93395800-93415800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:93396200-93411800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:93396400-93410400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:93396400-93412200	Weak transcription	Brain Angular Gyrus	brain
22	chr11:93396400-93417600	Weak transcription	Fetal Heart	heart
23	chr11:93396600-93407200	Weak transcription	Spleen	Spleen
24	chr11:93396600-93412000	Weak transcription	Psoas Muscle	Psoas
25	chr11:93396600-93413200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:93396600-93417600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:93396800-93412600	Weak transcription	A549	lung
28	chr11:93396800-93413200	Weak transcription	NHLF	lung
29	chr11:93396800-93415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:93397400-93441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:93397600-93409600	Strong transcription	K562	blood
32	chr11:93397600-93416400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:93397600-93441000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:93397800-93408000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:93397800-93416200	Weak transcription	Fetal Brain Male	brain
36	chr11:93398000-93426200	Strong transcription	Hela-S3	cervix
37	chr11:93398400-93408600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:93398600-93426000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:93398800-93406800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:93398800-93414000	Strong transcription	Fetal Thymus	thymus
41	chr11:93398800-93440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:93398800-93442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:93398800-93443200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:93399000-93426200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:93399000-93426200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:93399200-93439800	Strong transcription	Dnd41	blood
47	chr11:93399600-93414800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:93399600-93415400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:93399600-93418600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:93399600-93418800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links