Variant report

Variant	rs56031815
Chromosome Location	chr15:79139542-79139543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10444811	0.82[ASN][1000 genomes]
rs10519215	0.84[ASN][1000 genomes]
rs10519216	0.82[ASN][1000 genomes]
rs10519217	0.82[ASN][1000 genomes]
rs10519219	0.80[ASN][1000 genomes]
rs12050510	0.82[ASN][1000 genomes]
rs12050511	0.82[ASN][1000 genomes]
rs12050636	0.82[ASN][1000 genomes]
rs12438433	0.80[ASN][1000 genomes]
rs12439583	0.80[ASN][1000 genomes]
rs12440205	0.82[ASN][1000 genomes]
rs12440662	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12442036	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12442152	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12443105	0.82[ASN][1000 genomes]
rs12916055	0.91[EUR][1000 genomes]
rs1435163	0.82[ASN][1000 genomes]
rs16970194	0.85[ASN][1000 genomes]
rs16970233	0.80[ASN][1000 genomes]
rs16970242	0.80[ASN][1000 genomes]
rs1836556	0.82[ASN][1000 genomes]
rs34866535	0.80[ASN][1000 genomes]
rs4628930	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4778909	0.83[EUR][1000 genomes]
rs56225615	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56272008	0.85[ASN][1000 genomes]
rs56281795	0.85[ASN][1000 genomes]
rs56343754	0.87[ASN][1000 genomes]
rs56687292	0.85[ASN][1000 genomes]
rs59312571	0.85[ASN][1000 genomes]
rs59735519	0.85[ASN][1000 genomes]
rs61157089	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62011027	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62011029	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62011032	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62011033	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62011034	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62011036	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62011050	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62011052	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62011055	0.87[ASN][1000 genomes]
rs62011056	0.87[ASN][1000 genomes]
rs62013160	0.85[ASN][1000 genomes]
rs62013184	0.82[ASN][1000 genomes]
rs62013186	0.80[ASN][1000 genomes]
rs62013188	0.80[ASN][1000 genomes]
rs62013189	0.80[ASN][1000 genomes]
rs62013191	0.80[ASN][1000 genomes]
rs62013192	0.82[ASN][1000 genomes]
rs6495343	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7165139	0.97[EUR][1000 genomes]
rs7174727	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7179763	0.85[ASN][1000 genomes]
rs7181240	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8025870	0.84[ASN][1000 genomes]
rs8026077	0.87[ASN][1000 genomes]
rs8027635	0.85[ASN][1000 genomes]
rs8029496	0.85[ASN][1000 genomes]
rs8031280	0.85[ASN][1000 genomes]
rs8032867	0.85[ASN][1000 genomes]
rs8037651	0.85[ASN][1000 genomes]
rs8042187	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79134000-79147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:79134800-79142800	Weak transcription	Fetal Stomach	stomach

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