Variant report

Variant	rs56036238
Chromosome Location	chr1:215237397-215237398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10429947	0.84[EUR][1000 genomes]
rs10779638	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12061587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069967	0.84[ASN][1000 genomes]
rs12239750	0.84[ASN][1000 genomes]
rs1947364	0.81[ASN][1000 genomes]
rs2363553	0.81[ASN][1000 genomes]
rs4420064	0.85[ASN][1000 genomes]
rs4589083	0.95[ASN][1000 genomes]
rs55651080	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55662674	1.00[AMR][1000 genomes]
rs55922125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56001365	1.00[AMR][1000 genomes]
rs56053976	0.84[ASN][1000 genomes]
rs56257399	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56274886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56373924	0.84[ASN][1000 genomes]
rs59581685	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60526056	1.00[AMR][1000 genomes]
rs61818261	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61818265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818267	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61818294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61818295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818296	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818298	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818301	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818303	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818304	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818305	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818307	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818308	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818309	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818310	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818311	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818319	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818321	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818323	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818324	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818325	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818326	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818327	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818329	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818331	0.84[ASN][1000 genomes]
rs61819975	1.00[AMR][1000 genomes]
rs61819978	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61819980	0.94[ASN][1000 genomes]
rs61819981	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61819982	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820009	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820011	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820013	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820014	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820015	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6665177	0.85[ASN][1000 genomes]
rs7535436	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7551562	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215222800-215242200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:215229200-215237800	Weak transcription	NHEK	skin
3	chr1:215229400-215253000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215231600-215247600	Weak transcription	NHDF-Ad	bronchial
5	chr1:215234000-215237800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links